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PDBsum entry 6pc5
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Tunnel analysis for: 6pc5 calculated with  MOLE 2.0
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PDB id
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6pc5
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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0 tunnels,
coloured by tunnel radius |
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14 tunnels,
coloured by
tunnel radius
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14 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.76 |
1.76 |
56.3 |
-0.77 |
-0.70 |
7.9 |
64 |
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2 |
1 |
0 |
0 |
1 |
0 |
0 |
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U 1995 I C 1996 I A 2513 I G 2545 I U 2546 I A
2547 I U 2548 I G 2643 I G 2644 I A 2675 I C 2676
I G 2677 I C 2678 I G 2731 I G 2732 I A 2733 I G
2770 I C 2771 I C 2772 I
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2 |
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1.52 |
1.64 |
59.6 |
-0.74 |
-0.69 |
6.6 |
76 |
1 |
1 |
1 |
1 |
1 |
0 |
0 |
G 2643 I G 2644 I G 2673 I G 2674 I A 2675 I C
2676 I G 2677 I C 2678 I A 2679 I A 2725 I A 2726
I A 2727 I U 2728 I G 2731 I G 2732 I A 2733 I G
2770 I C 2771 I C 2772 I
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3 |
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1.73 |
1.73 |
68.7 |
-1.08 |
-0.75 |
12.4 |
80 |
4 |
2 |
1 |
0 |
1 |
0 |
0 |
G 2621 I U 2622 I A 2635 I G 2642 I G 2643 I G
2644 I C 2678 I G 2731 I G 2732 I A 2733 I G 2770
I C 2771 I C 2772 I C 2773 I C 2774 I G 2775 I C
2827 I G 2828 I A 2829 I C 2830 I A 2835 I U 2836
I
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4 |
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1.73 |
1.73 |
68.9 |
-0.99 |
-0.69 |
12.0 |
80 |
4 |
1 |
0 |
2 |
1 |
0 |
0 |
G 2621 I U 2622 I A 2635 I C 2636 I U 2637 I G
2642 I G 2643 I G 2644 I C 2678 I G 2731 I G 2732
I A 2733 I G 2770 I C 2771 I C 2772 I C 2773 I C
2774 I G 2775 I C 2827 I
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5 |
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1.72 |
1.72 |
69.8 |
-0.77 |
-0.71 |
7.8 |
64 |
2 |
1 |
0 |
0 |
1 |
0 |
0 |
U 2492 I G 2509 I C 2512 I A 2513 I G 2545 I U
2546 I A 2547 I U 2555 I C 2556 I G 2567 I U 2568
I G 2569 I G 2570 I U 2571 I C 2573 I G 2574 I G
2643 I G 2644 I C 2676 I G 2677 I C 2678 I G 2731
I G 2732 I A 2733 I G 2770 I C 2771 I C 2772 I
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6 |
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1.73 |
1.73 |
70.3 |
-0.72 |
-0.76 |
7.9 |
66 |
2 |
1 |
0 |
0 |
1 |
0 |
0 |
G 2621 I U 2622 I G 2623 I G 2624 I G 2625 I C
2626 I G 2627 I A 2632 I G 2633 I G 2641 I G 2642
I G 2643 I G 2644 I C 2678 I G 2731 I G 2732 I A
2733 I G 2770 I C 2771 I C 2772 I C 2773 I C 2774
I G 2775 I A 2776 I G 2777 I G 2812 I C 2827 I C
2889 I
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7 |
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1.75 |
1.75 |
72.6 |
-0.76 |
-0.71 |
7.8 |
64 |
2 |
1 |
0 |
0 |
1 |
0 |
0 |
G 2509 I C 2510 I U 2511 I C 2512 I A 2513 I G
2545 I U 2546 I A 2547 I U 2548 I G 2549 I C 2556
I G 2557 I C 2558 I C 2559 I A 2566 I G 2567 I G
2643 I G 2644 I C 2676 I G 2677 I C 2678 I G 2731
I G 2732 I A 2733 I G 2770 I C 2771 I C 2772 I
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8 |
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1.72 |
1.72 |
81.5 |
-0.74 |
-0.76 |
8.1 |
66 |
2 |
1 |
0 |
0 |
1 |
0 |
0 |
G 17 I U 18 I C 516 I C 517 I U 1263 I A 1264 I A
2019 I A 2020 I C 2021 I U 2022 I A 2042 I C 2043
I C 2044 I C 2045 I G 2046 I U 2615 I C 2616 I U
2617 I G 2618 I C 2619 I G 2621 I U 2622 I G 2641
I G 2642 I G 2643 I G 2644 I C 2678 I G 2731 I G
2732 I A 2733 I G 2770 I C 2771 I C 2772 I C 2773
I C 2774 I A 2778 I
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9 |
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1.72 |
1.72 |
89.4 |
-0.76 |
-0.69 |
7.0 |
71 |
2 |
2 |
1 |
1 |
2 |
0 |
0 |
G 1022 I C 1123 I G 1124 I G 1125 I A 1127 I U
2514 I C 2515 I A 2516 I C 2517 I A 2541 I A 2542
I G 2543 I G 2544 I G 2642 I G 2643 I G 2644 I G
2645 I C 2678 I G 2731 I G 2732 I A 2733 I A 2740
I A 2741 I A 2757 I C 2767 I G 2770 I C 2771 I C
2772 I C 2773 I
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10 |
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1.72 |
1.72 |
95.3 |
-0.76 |
-0.75 |
8.4 |
66 |
2 |
1 |
0 |
0 |
1 |
0 |
0 |
U 744 I 1MG 745 I PSU 746 I 5MU 747 I G 748 I A
1269 I U 1657 I G 2004 I A 2005 I A 2014 I A 2042
I C 2043 I C 2045 I G 2046 I C 2047 I G 2048 I G
2049 I C 2050 I C 2611 I C 2612 I U 2613 I A 2614
I U 2615 I C 2616 I U 2617 I G 2618 I C 2619 I G
2621 I U 2622 I G 2641 I G 2642 I G 2643 I G 2644
I C 2678 I G 2731 I G 2732 I A 2733 I G 2770 I C
2771 I C 2772 I C 2773 I C 2774 I A 2778 I
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11 |
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1.72 |
1.72 |
97.8 |
-0.75 |
-0.76 |
8.3 |
66 |
2 |
1 |
0 |
0 |
1 |
0 |
0 |
G 15 I C 16 I G 17 I G 524 I U 525 I G 533 I U
534 I G 535 I U 552 I G 553 I U 554 I G 555 I A
556 I C 2021 I U 2022 I C 2023 I A 2042 I C 2043
I C 2044 I C 2045 I U 2617 I G 2618 I C 2619 I G
2621 I U 2622 I G 2641 I G 2642 I G 2643 I G 2644
I C 2678 I G 2731 I G 2732 I A 2733 I G 2770 I C
2771 I C 2772 I C 2773 I C 2774 I A 2778 I
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12 |
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1.71 |
1.71 |
115.5 |
-0.61 |
-0.66 |
5.6 |
69 |
2 |
1 |
1 |
1 |
2 |
0 |
0 |
C 961 I G 1026 I A 1027 I A 1028 I A 1029 I G
1128 I A 1129 I U 1132 I A 1133 I A 1134 I G 2027
I U 2028 I C 2456 I PSU 2457 I G 2458 I G 2487 I
G 2488 I G 2490 I U 2514 I C 2515 I A 2516 I C
2517 I A 2542 I G 2543 I G 2544 I G 2642 I G 2643
I G 2644 I G 2645 I C 2678 I G 2731 I G 2732 I A
2733 I C 2767 I G 2770 I C 2771 I C 2772 I C 2773
I C 88 J U 89 J
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13 |
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1.22 |
1.22 |
25.6 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
C 645 I U 646 I G 647 I G 648 I G 649 I C 2350 I
G 2351 I A 2352 I G 2353 I G 2367 I
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14 |
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1.48 |
1.48 |
19.4 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
A 226 I A 227 I C 228 I C 229 I G 230 I G 232 I C
418 I U 419 I C 420 I
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program