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PDBsum entry 6j4z
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Pore analysis for: 6j4z calculated with  MOLE 2.0
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PDB id
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6j4z
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Pores calculated on whole structure |
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Pores calculated excluding ligands
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31 pores,
coloured by radius |
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31 pores,
coloured by radius
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31 pores,
coloured as in
list below
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Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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2.11 |
2.11 |
26.7 |
-0.84 |
-0.18 |
17.4 |
74 |
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4 |
1 |
0 |
2 |
1 |
0 |
0 |
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DC -25 N DT -24 N DT -23 N DG 20 T DG 28 T
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2 |
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2.83 |
3.17 |
52.4 |
-1.85 |
-0.67 |
18.1 |
77 |
6 |
2 |
2 |
0 |
1 |
1 |
0 |
DA -15 N DA -14 N DA -13 N DA -12 N DC -
11 N DC 60 N DG -55 T DA 16 T DA 17 T DC 18 T
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3 |
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2.35 |
2.54 |
64.1 |
-0.75 |
-0.44 |
10.5 |
89 |
3 |
0 |
4 |
2 |
1 |
0 |
0 |
DC 42 0 DA 50 0 DC 51 0 DT -53 1 DC -52 1 DG -
51 1 DT -50 1 DT -46 1 DG -
45 1 DC 30 N DT 31 N DA -35 T DA -25 T
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4 |
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3.28 |
3.44 |
79.5 |
-1.18 |
-0.70 |
13.6 |
89 |
6 |
1 |
5 |
2 |
0 |
0 |
0 |
DA 29 0 DT 31 0 DG 40 0 DA 41 0 DC 42 0 DG -
45 1 DG -37 1 DG -36 1 DG -35 1 DT -34 1 DC -
25 1 DC 40 N DC 41 N DG -55 T DA -45 T DG -
37 T DT -36 T DA -35 T
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5 |
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1.33 |
1.51 |
100.5 |
-1.25 |
-0.37 |
16.1 |
80 |
11 |
4 |
3 |
2 |
3 |
1 |
0 |
DC -20 N DG -19 N DG -
18 N DT 14 T DT 15 T DC 22 T DA 23 T DA 24 T
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6 |
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1.55 |
3.96 |
101.7 |
-1.70 |
-0.57 |
18.1 |
77 |
8 |
6 |
2 |
1 |
3 |
1 |
0 |
DT -24 N DT -23 N DG -22 N DG -
21 N DG 26 T DG 27 T DG 28 T
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7 |
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1.70 |
2.45 |
122.4 |
-0.41 |
-0.03 |
16.0 |
79 |
11 |
6 |
7 |
17 |
3 |
2 |
0 |
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8 |
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3.22 |
3.40 |
125.9 |
-1.50 |
-0.44 |
16.2 |
80 |
8 |
3 |
5 |
7 |
1 |
2 |
0 |
DC -26 N DC -25 N DT -24 N DT -23 N DT -17 N DT -
16 N DT 14 T DT 15 T DG 20 T DC 21 T DG 28 T DA
29 T
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9 |
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2.08 |
4.31 |
127.4 |
-1.44 |
-0.62 |
16.1 |
81 |
10 |
5 |
6 |
2 |
1 |
1 |
0 |
DC -54 N DT -53 N DC -52 N DG -51 N DT -50 N DG -
44 N DT -43 N DG -42 N DT -41 N DC -25 N DT -
24 N DT -23 N DG 28 T DG 47 T DG 48 T DC 49 T
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10 |
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2.93 |
2.96 |
129.3 |
-1.47 |
-0.33 |
18.7 |
84 |
10 |
3 |
5 |
8 |
0 |
1 |
0 |
DC -26 N DC -25 N DT -24 N DT -23 N DT -17 N DT -
16 N DT 14 T DT 15 T DG 20 T DC 21 T
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11 |
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1.75 |
2.03 |
149.7 |
-0.90 |
-0.18 |
19.0 |
78 |
11 |
7 |
7 |
16 |
3 |
3 |
0 |
DC -26 N DC -25 N DT -24 N DT -
23 N DG 28 T DA 29 T
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12 |
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1.85 |
2.22 |
153.1 |
-0.89 |
-0.08 |
21.4 |
81 |
13 |
7 |
8 |
17 |
2 |
2 |
0 |
DC -26 N DC -25 N DT -24 N DT -23 N DG 20 T
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13 |
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2.62 |
2.87 |
158.2 |
-1.39 |
-0.18 |
20.7 |
83 |
16 |
7 |
11 |
10 |
3 |
3 |
0 |
DC -26 N DC -25 N DT -24 N DT -23 N DG 20 T
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14 |
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2.81 |
2.81 |
167.0 |
-1.40 |
-0.46 |
14.8 |
85 |
10 |
7 |
7 |
7 |
3 |
2 |
1 |
DC -54 N DT -53 N DC -52 N DG -51 N DT -50 N DG -
49 N DC -48 N DC -47 N DT -46 N C -3 P U -2 P G -
1 P DA 43 T DC 44 T DA 46 T DG 47 T DG 48 T DC 49
T
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15 |
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2.12 |
2.11 |
175.5 |
-1.72 |
-0.59 |
15.6 |
80 |
9 |
3 |
11 |
2 |
4 |
2 |
0 |
DC -25 1 DC -25 N DT -24 N DT -23 N DA -15 N DA -
14 N DA -13 N DA -12 N DC -11 N DC 52 N DG -
55 T DA 16 T DA 17 T DC 18 T DG 28 T
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16 |
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2.44 |
3.58 |
180.7 |
-1.21 |
-0.23 |
18.9 |
83 |
14 |
5 |
10 |
11 |
2 |
4 |
0 |
DT -17 N DT -16 N DT 14 T DT 15 T DG 20 T DC 21 T
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17 |
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1.32 |
2.26 |
182.1 |
-1.52 |
-0.27 |
27.2 |
81 |
17 |
14 |
9 |
13 |
3 |
1 |
1 |
DC -26 N DC -25 N DT -24 N DT -23 N DG 20 T
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18 |
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2.24 |
3.60 |
184.8 |
-1.64 |
-0.52 |
17.1 |
80 |
12 |
6 |
13 |
4 |
4 |
1 |
0 |
DC -25 1 DC -54 N DT -53 N DC -52 N DG -51 N DT -
50 N DG -44 N DT -43 N DG -42 N DT -
41 N DC 52 N DG -55 T DG 47 T DG 48 T DC 49 T
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19 |
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1.78 |
2.07 |
194.4 |
-1.08 |
-0.17 |
20.8 |
80 |
12 |
7 |
9 |
17 |
2 |
3 |
0 |
DT -17 N DT -16 N DT 14 T DT 15 T DG 20 T DC 21 T
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20 |
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1.57 |
3.99 |
207.0 |
-1.50 |
-0.43 |
19.2 |
80 |
14 |
7 |
3 |
5 |
5 |
2 |
0 |
DG 26 0 DG 27 0 DA 34 0 DC 35 0 DC 36 0 DC 37 0 D
A 38 0 DA 39 0 DG 40 0 DA 41 0 DC 42 0 DG -
45 1 DT -43 1 DT -41 1 DG -33 1 DT -32 1 DA -
31 1 DA -30 1 DT -29 1 DC -27 1 DG -22 N DG -
21 N DA -35 T DG 26 T
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21 |
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1.19 |
2.33 |
209.7 |
-1.41 |
-0.36 |
20.9 |
80 |
19 |
16 |
7 |
13 |
5 |
3 |
0 |
DC -54 N DT -53 N DC -52 N DG -51 N DT -
50 N DG 47 T DG 48 T DC 49 T
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22 |
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1.72 |
2.67 |
216.9 |
-1.51 |
-0.40 |
21.9 |
79 |
16 |
13 |
9 |
14 |
1 |
3 |
2 |
DC -54 N DT -53 N DC -52 N DG -51 N DT -
50 N DG 47 T DG 48 T DC 49 T
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23 |
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1.33 |
2.32 |
222.0 |
-1.61 |
-0.30 |
24.6 |
79 |
28 |
19 |
10 |
19 |
9 |
5 |
1 |
U -2 P G -1 P
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24 |
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1.39 |
2.39 |
219.7 |
-1.47 |
-0.32 |
24.6 |
82 |
16 |
14 |
10 |
14 |
2 |
2 |
1 |
DT -17 N DT -16 N DT 14 T DT 15 T DG 20 T DC 21 T
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25 |
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2.38 |
3.96 |
240.2 |
-1.44 |
-0.36 |
15.7 |
83 |
15 |
9 |
18 |
11 |
6 |
3 |
0 |
DC -25 1 DG -45 N DG -44 N DT -43 N DG -42 N DT -
41 N DC 52 N DC 60 N C -3 P U -2 P G -1 P DG -
55 T DA 43 T
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26 |
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1.85 |
2.59 |
259.4 |
-2.28 |
-0.49 |
27.4 |
82 |
18 |
23 |
15 |
6 |
7 |
6 |
0 |
C -3 P U -2 P G -1 P
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27 |
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1.20 |
1.53 |
307.5 |
-1.58 |
-0.38 |
20.9 |
80 |
28 |
17 |
18 |
26 |
8 |
5 |
0 |
DT -29 N DC -28 N DC -27 N
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28 |
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1.85 |
2.54 |
314.0 |
-2.25 |
-0.63 |
27.3 |
82 |
22 |
24 |
14 |
4 |
4 |
5 |
0 |
DT -32 N DC -25 N DT -24 N DT -
23 N G 0 P U 1 P G 2 P C 4 P U 5 P U 6 P DG 28 T
DA 29 T DT 30 T DT 31 T DC 36 T DC 37 T DA 38 T D
A 39 T DG 40 T
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29 |
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1.43 |
3.42 |
298.3 |
-2.15 |
-0.59 |
25.9 |
82 |
21 |
22 |
14 |
5 |
5 |
5 |
1 |
DC -54 N DT -53 N DC -52 N DG -51 N DT -50 N DG -
49 N DC -48 N DC -
47 N G 0 P U 1 P DG 40 T DA 41 T DC 42 T DA 43 T
DC 44 T DA 46 T DG 47 T DG 48 T DC 49 T
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30 |
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1.75 |
1.99 |
417.1 |
-1.97 |
-0.45 |
27.5 |
78 |
22 |
40 |
12 |
18 |
9 |
5 |
0 |
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31 |
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1.40 |
1.58 |
26.8 |
1.34 |
0.32 |
5.9 |
80 |
1 |
1 |
1 |
6 |
2 |
1 |
0 |
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program