PDBsum entry 6j4z Go to PDB code:  Tunnel analysis for: 6j4z calculated with MOLE 2.0 PDB id 6j4z Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   6 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.16 1.16 130.8 -1.16 -0.58 10.8 85 7 5 11 6 7 0 1  DT -53 N DC -52 N DT -50 N DG -49 N DC -48 N DC - 47 N DG 40 T DA 41 T DC 42 T DA 43 T DC 44 T DA 46 T DG 47 T DG 48 T DC 49 T 2 1.19 1.22 143.9 -1.14 -0.47 16.6 83 11 9 8 9 7 5 0  G 0 P U 1 P DG 40 T 3 1.19 1.22 146.3 -1.05 -0.54 15.2 83 10 8 7 8 5 0 0  DT -38 N DT - 32 N U 1 P G 2 P C 4 P U 5 P U 6 P DC 36 T DC 37 T DA 38 T DA 39 T DG 40 T 4 1.20 1.23 171.5 -1.16 -0.45 16.0 81 17 12 9 14 8 5 0  U -2 P G -1 P G 0 P U 1 P DG 40 T 5 1.34 2.87 22.4 1.37 0.21 6.7 88 0 1 1 7 1 0 0   6 1.35 2.86 22.4 2.00 0.54 2.8 84 1 0 1 6 2 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.