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PDBsum entry 6fdh

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Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 6fdh calculated with MOLE 2.0 PDB id
6fdh
Pores calculated on whole structure Pores calculated excluding ligands

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6 pores, coloured by radius 6 pores, coloured by radius 6 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.18 1.18 38.1 -0.52 -0.19 12.6 81 4 2 1 3 3 0 0  CL 201 A CL 203 A
2 1.20 1.19 38.3 -0.93 -0.32 18.9 83 4 3 1 3 3 0 0  CL 203 A CL 208 B
3 1.21 1.81 69.1 -2.13 -0.61 25.9 86 4 5 2 3 2 0 0  CL 201 A CL 208 B CL 209 B
4 1.07 2.36 69.4 -0.48 -0.31 18.6 81 3 5 0 8 2 0 0  CL 203 A
5 1.08 2.36 71.9 -1.47 -0.50 23.1 86 4 6 1 7 1 0 0  CL 201 A CL 203 A
6 1.07 2.36 72.7 -1.83 -0.62 27.9 87 4 7 1 7 1 0 0  CL 203 A CL 208 B

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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