spacer
spacer

PDBsum entry 6f7c

Go to PDB code: 
Top Page protein ligands metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 6f7c calculated with MOLE 2.0 PDB id
6f7c
Tunnels calculated on whole structure Tunnels calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
13 tunnels, coloured by tunnel radius 8 tunnels, coloured by tunnel radius 8 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.18 3.17 75.5 -0.33 0.09 14.9 75 7 5 4 11 7 1 1  
2 1.18 3.17 75.5 -0.33 0.09 14.9 75 7 5 4 11 7 1 1  
3 1.23 1.33 17.3 -1.73 -0.02 11.9 79 1 0 3 1 3 0 0  
4 1.23 1.33 17.7 -1.68 0.00 11.0 77 1 0 3 1 3 1 0  
5 1.30 2.17 21.5 -0.95 -0.03 10.3 83 2 0 3 3 2 1 0  
6 1.20 1.34 16.5 -1.21 -0.35 15.2 89 1 1 3 2 1 1 0  
7 1.20 1.34 21.6 -0.93 -0.19 16.8 81 1 1 2 2 1 2 0  
8 1.24 2.30 15.9 -1.46 -0.42 7.3 93 1 0 4 2 1 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer