spacer
spacer

PDBsum entry 6baf

Go to PDB code: 
Top Page protein ligands pores links
Pore analysis for: 6baf calculated with MOLE 2.0 PDB id
6baf
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
1 pore, coloured by radius 3 pores, coloured by radius 3 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.43 1.70 33.2 0.12 0.23 14.4 84 5 1 2 7 2 1 0  BLR 401 A
2 1.46 2.36 34.2 -0.31 0.13 18.0 75 3 3 2 4 4 0 0  
3 1.43 1.72 37.7 -0.43 0.02 13.6 80 4 1 3 7 4 1 0  BLR 401 A

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer