spacer
spacer

PDBsum entry 6aoc
Go to PDB code: 
Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 6aoc calculated with MOLE 2.0 PDB id
6aoc
Pores calculated on whole structure Pores calculated excluding ligands
View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
16 pores, coloured by radius 12 pores, coloured by radius 12 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 4.40 5.46 32.7 -2.28 -0.45 21.0 78 6 2 3 3 0 1 0  
2 1.83 1.80 45.0 -1.85 -0.53 22.9 80 4 4 3 3 1 3 0  EDO 626 C
3 1.81 3.07 53.2 -1.37 -0.40 19.2 79 6 5 3 4 2 1 0  EDO 609 A EDO 521 B EDO 523 B
4 4.26 4.81 56.4 -2.62 -0.47 39.6 82 10 7 2 3 1 1 0  EDO 613 A
5 4.40 5.46 57.1 -2.52 -0.44 29.3 78 13 2 3 2 0 1 0  
6 2.26 2.38 58.1 -1.67 -0.37 18.9 78 9 4 5 4 1 1 0  EDO 609 A
7 1.83 3.07 69.5 -1.66 -0.39 19.6 79 8 6 3 4 1 2 0  EDO 609 A EDO 521 B EDO 523 B
8 2.28 2.36 74.0 -2.00 -0.37 26.3 80 14 5 6 4 1 0 0  EDO 609 A
9 1.26 1.45 109.4 -1.31 -0.30 19.0 78 11 8 4 10 5 5 0  EDO 606 C EDO 626 C
10 1.26 1.33 153.1 -1.54 -0.30 15.1 78 11 5 6 5 5 1 0  
11 1.30 1.32 156.4 -1.46 -0.19 14.8 76 9 6 5 6 9 3 0  EDO 609 C PGE 502 D EDO 511 D
12 1.41 1.74 162.9 -1.55 -0.28 18.2 75 8 6 3 3 6 2 0  EDO 609 C

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer