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PDBsum entry 5yef
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Pore analysis for: 5yef calculated with  MOLE 2.0
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PDB id
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5yef
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Pores calculated on whole structure |
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Pores calculated excluding ligands
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11 pores,
coloured by radius |
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11 pores,
coloured by radius
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11 pores,
coloured as in
list below
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Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.16 |
1.17 |
26.5 |
-1.16 |
-0.38 |
15.5 |
89 |
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3 |
0 |
2 |
1 |
0 |
0 |
0 |
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DC 14 H DT 15 H DC 16 H DT 17 H DG 18 H DT 24 H D
A 25 H DC 9 I DA 10 I DG 11 I DC 12 I
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2 |
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2.14 |
2.29 |
55.8 |
-0.91 |
-0.29 |
14.0 |
76 |
4 |
0 |
1 |
2 |
2 |
1 |
0 |
DG 6 H DA 7 H DC 8 H DT 9 H DC 10 H DG 11 H
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3 |
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1.09 |
1.09 |
57.0 |
-0.63 |
-0.07 |
10.2 |
75 |
5 |
0 |
3 |
4 |
3 |
0 |
0 |
DG 11 K DC 12 K DC 13 K DC 14 K DT 15 K DC 16 K
DT 17 K DA 26 K DC 8 L DC 9 L
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4 |
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2.19 |
2.80 |
59.1 |
-0.31 |
-0.36 |
9.8 |
80 |
4 |
2 |
1 |
3 |
1 |
1 |
0 |
DT 4 K DG 6 K DA 7 K DC 8 K DT 9 K DC 10 K DG 11
K DA 21 L DG 22 L DT 23 L
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5 |
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1.76 |
1.75 |
69.6 |
-0.97 |
-0.25 |
20.1 |
88 |
5 |
0 |
2 |
4 |
0 |
0 |
0 |
DT 20 K DG 21 K DA 26 K DA 27 K DG 28 K DT 5 L DA
6 L DA 7 L DC 8 L DC 9 L
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6 |
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1.18 |
1.19 |
26.1 |
-1.11 |
-0.44 |
18.1 |
88 |
3 |
0 |
0 |
2 |
0 |
0 |
0 |
DG 6 C DA 7 C DC 8 C DC 19 D DG 20 D DA 21 D
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7 |
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1.98 |
1.98 |
40.7 |
-0.27 |
-0.26 |
12.9 |
80 |
3 |
1 |
1 |
2 |
1 |
0 |
0 |
DG 6 C DA 7 C DC 8 C DT 9 C DC 10 C DC 24 D
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8 |
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2.00 |
2.00 |
45.7 |
-0.20 |
-0.28 |
11.5 |
75 |
5 |
0 |
0 |
2 |
1 |
0 |
0 |
DT 4 E DC 5 E DG 6 E DA 7 E DC 8 E DT 9 E DG 22 F
DT 23 F DC 24 F
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9 |
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1.98 |
1.98 |
51.2 |
-0.49 |
-0.46 |
10.1 |
81 |
3 |
1 |
1 |
1 |
1 |
0 |
0 |
DT 4 C DC 5 C DG 6 C DA 7 C DC 8 C DT 9 C DC 10 C
DG 22 D DT 23 D DC 24 D
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10 |
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1.18 |
1.18 |
52.3 |
-0.95 |
-0.38 |
17.2 |
81 |
5 |
1 |
1 |
2 |
1 |
0 |
0 |
DA 7 C DC 8 C DT 9 C DC 10 C DC 19 D DG 20 D DA
21 D DC 24 D
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11 |
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2.54 |
2.54 |
28.0 |
-0.52 |
-0.66 |
5.7 |
90 |
1 |
0 |
1 |
1 |
0 |
0 |
0 |
DA 25 C DA 26 C DA 27 C DG 28 C DT 4 D DT 5 D DA
6 D DA 7 D DC 8 D DC 9 D
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program