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PDBsum entry 5yef
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Tunnel analysis for: 5yef calculated with  MOLE 2.0
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PDB id
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5yef
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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11 tunnels,
coloured by tunnel radius |
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6 tunnels,
coloured by
tunnel radius
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6 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.10 |
1.11 |
28.2 |
-2.11 |
-0.43 |
23.9 |
81 |
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4 |
1 |
2 |
0 |
2 |
0 |
0 |
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DC 10 H DG 11 H DC 12 H DA 15 I DG 16 I DG 17 I
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2 |
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1.24 |
1.25 |
31.2 |
-2.05 |
-0.47 |
26.5 |
82 |
5 |
1 |
1 |
1 |
2 |
0 |
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DT 9 C DC 10 C DG 11 C DC 12 C DA 15 D DG 16 D DG
17 D
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3 |
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1.23 |
1.23 |
31.7 |
-1.90 |
-0.62 |
23.5 |
88 |
5 |
1 |
2 |
1 |
1 |
0 |
0 |
DT 9 C DC 10 C DG 11 C DC 12 C DA 15 D DG 16 D DG
17 D
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4 |
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1.12 |
1.31 |
32.2 |
-2.35 |
-0.55 |
30.1 |
85 |
5 |
1 |
1 |
1 |
1 |
0 |
0 |
DT 9 C DC 10 C DG 11 C DC 12 C DA 15 D DG 16 D DG
17 D
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5 |
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1.37 |
1.38 |
18.2 |
0.41 |
0.10 |
17.5 |
90 |
2 |
1 |
0 |
2 |
0 |
0 |
0 |
DT 20 H DG 21 H DA 7 I DC 8 I
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6 |
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1.44 |
1.62 |
16.5 |
0.53 |
0.13 |
18.3 |
89 |
1 |
1 |
0 |
2 |
0 |
0 |
0 |
DT 20 C DG 21 C DA 7 D DC 8 D
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program