 |
PDBsum entry 5ydb
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Pore analysis for: 5ydb calculated with  MOLE 2.0
|
PDB id
|
|
|
|
5ydb
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Pores calculated on whole structure |
|
Pores calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
1 pore,
coloured by radius |
|
5 pores,
coloured by radius
|
5 pores,
coloured as in
list below
|
|
|
|
|
|
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.26 |
2.33 |
38.0 |
-1.07 |
-0.17 |
22.3 |
85 |
|
8 |
3 |
4 |
5 |
2 |
0 |
0 |
|
DQA 202 B
|
 |
|
2 |
 |
1.84 |
2.11 |
48.1 |
-1.41 |
-0.01 |
23.2 |
80 |
6 |
0 |
3 |
6 |
2 |
0 |
0 |
DQA 202 B
|
|
3 |
 |
1.39 |
2.06 |
50.2 |
-1.16 |
-0.03 |
26.2 |
88 |
9 |
3 |
6 |
9 |
2 |
0 |
1 |
NA 201 A DQA 202 A NA 201 B
|
|
4 |
 |
1.26 |
2.37 |
51.3 |
-1.17 |
-0.03 |
25.7 |
89 |
12 |
2 |
7 |
9 |
1 |
0 |
1 |
NA 201 A DQA 202 A NA 201 B DQA 202 B
|
 |
5 |
 |
1.32 |
2.02 |
56.7 |
-0.82 |
-0.02 |
21.8 |
89 |
11 |
1 |
7 |
8 |
1 |
0 |
1 |
NA 201 C DQA 202 C NA 201 D DQA 202 D
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program