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PDBsum entry 5ydb
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Tunnel analysis for: 5ydb calculated with  MOLE 2.0
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PDB id
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5ydb
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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4 tunnels,
coloured by tunnel radius |
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13 tunnels,
coloured by
tunnel radius
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13 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.55 |
1.78 |
18.4 |
-1.07 |
0.00 |
25.7 |
92 |
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7 |
0 |
2 |
2 |
0 |
0 |
1 |
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NA 201 B
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2 |
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1.54 |
1.76 |
20.6 |
-0.74 |
0.12 |
25.1 |
93 |
6 |
0 |
2 |
3 |
0 |
0 |
1 |
NA 201 A NA 201 B
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3 |
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1.54 |
1.78 |
21.0 |
-0.89 |
0.07 |
25.3 |
93 |
6 |
0 |
2 |
3 |
0 |
0 |
1 |
NA 201 A NA 201 B
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4 |
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1.27 |
2.45 |
22.3 |
-1.14 |
-0.06 |
25.6 |
92 |
6 |
1 |
3 |
4 |
0 |
0 |
1 |
NA 201 B DQA 202 B
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5 |
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1.80 |
1.85 |
23.7 |
-0.91 |
0.01 |
25.5 |
88 |
5 |
2 |
2 |
3 |
1 |
0 |
1 |
NA 201 B
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6 |
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1.78 |
1.91 |
26.0 |
-0.52 |
0.13 |
24.0 |
89 |
4 |
2 |
2 |
4 |
1 |
0 |
1 |
NA 201 A NA 201 B
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7 |
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1.75 |
1.88 |
26.4 |
-0.51 |
0.12 |
23.9 |
89 |
4 |
2 |
2 |
4 |
1 |
0 |
1 |
NA 201 A NA 201 B
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8 |
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1.26 |
2.52 |
26.7 |
-0.55 |
0.09 |
22.6 |
92 |
7 |
1 |
3 |
5 |
0 |
0 |
1 |
NA 201 A NA 201 B DQA 202 B
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9 |
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1.26 |
2.55 |
27.1 |
-0.57 |
0.09 |
22.8 |
92 |
7 |
1 |
3 |
5 |
0 |
0 |
1 |
NA 201 A NA 201 B DQA 202 B
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10 |
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1.39 |
2.62 |
27.5 |
-0.62 |
0.12 |
23.6 |
92 |
7 |
1 |
3 |
4 |
0 |
0 |
1 |
NA 201 A DQA 202 A NA 201 B
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11 |
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1.39 |
2.64 |
28.0 |
-0.51 |
0.15 |
23.4 |
92 |
7 |
1 |
3 |
4 |
0 |
0 |
1 |
NA 201 A DQA 202 A NA 201 B
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12 |
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1.39 |
2.13 |
31.5 |
-0.62 |
0.14 |
24.1 |
92 |
8 |
1 |
3 |
5 |
0 |
0 |
1 |
NA 201 A DQA 202 A NA 201 B
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13 |
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1.26 |
2.50 |
32.5 |
-0.59 |
0.08 |
21.0 |
85 |
7 |
1 |
4 |
5 |
1 |
0 |
1 |
NA 201 B DQA 202 B
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program