PDBsum entry 5y9c Go to PDB code:  Tunnel analysis for: 5y9c calculated with MOLE 2.0 PDB id 5y9c Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   9 tunnels, coloured by tunnel radius 9 tunnels, coloured by tunnel radius 9 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.23 1.42 96.9 -1.43 -0.31 21.1 86 14 8 13 6 6 3 0   2 1.52 1.80 16.8 -1.04 -0.21 15.2 76 2 3 2 2 2 0 0   3 1.52 1.82 18.2 -0.97 -0.11 13.0 72 2 2 2 2 3 0 0   4 1.41 2.65 29.4 -2.02 -0.47 20.9 78 3 4 3 1 2 0 0   5 1.38 2.89 29.9 -1.97 -0.41 19.9 77 3 3 3 1 2 0 0   6 1.40 1.63 15.4 -0.95 -0.22 16.5 76 2 3 2 2 2 0 0   7 1.54 1.76 15.3 -0.83 -0.15 16.0 76 2 3 2 2 2 0 0   8 1.66 1.83 18.4 -1.25 -0.34 14.5 69 1 2 2 2 2 1 0   9 1.43 2.38 21.0 -1.24 -0.31 13.1 79 1 2 3 3 1 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.