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PDBsum entry 5y2c
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Tunnel analysis for: 5y2c calculated with  MOLE 2.0
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PDB id
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5y2c
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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5 tunnels,
coloured by tunnel radius |
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11 tunnels,
coloured by
tunnel radius
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11 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.62 |
3.20 |
35.9 |
-0.91 |
0.48 |
14.0 |
66 |
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4 |
5 |
0 |
6 |
11 |
0 |
0 |
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NAG 3 C NAG 4 C NAG 5 C
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2 |
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1.34 |
1.53 |
36.9 |
-1.01 |
0.26 |
22.2 |
72 |
4 |
5 |
1 |
8 |
7 |
2 |
0 |
NAG 3 E NAG 4 E NAG 5 E
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3 |
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1.55 |
3.00 |
39.0 |
-0.91 |
0.64 |
10.4 |
66 |
2 |
3 |
2 |
5 |
7 |
0 |
0 |
NAG 1 E NAG 2 E NAG 3 E NAG 4 E NAG 5 E
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4 |
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1.63 |
3.24 |
39.5 |
-1.11 |
0.43 |
10.1 |
67 |
6 |
3 |
2 |
6 |
11 |
0 |
0 |
NAG 1 C NAG 3 C NAG 4 C NAG 5 C
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5 |
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1.55 |
3.00 |
43.6 |
-0.74 |
0.44 |
12.2 |
66 |
6 |
6 |
0 |
7 |
11 |
0 |
0 |
NAG 5 C NAG 3 E NAG 4 E NAG 5 E
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6 |
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1.55 |
2.71 |
44.4 |
-1.80 |
0.17 |
24.5 |
71 |
4 |
9 |
1 |
6 |
11 |
1 |
0 |
NAG 3 C NAG 4 C NAG 5 C
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7 |
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1.63 |
3.24 |
47.9 |
-1.00 |
0.39 |
10.1 |
66 |
4 |
4 |
2 |
7 |
10 |
0 |
0 |
NAG 3 C NAG 4 C NAG 5 C NAG 1 E NAG 2 E NAG 3 E
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8 |
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1.55 |
3.00 |
49.1 |
-1.51 |
0.20 |
20.7 |
71 |
6 |
10 |
1 |
6 |
10 |
1 |
0 |
NAG 5 C NAG 3 E NAG 4 E NAG 5 E
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9 |
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1.34 |
1.52 |
50.3 |
-1.15 |
0.13 |
21.0 |
73 |
7 |
7 |
1 |
10 |
8 |
1 |
0 |
NAG 3 C NAG 4 C NAG 5 C
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10 |
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1.55 |
3.00 |
54.9 |
-1.26 |
0.00 |
18.9 |
74 |
8 |
6 |
2 |
10 |
7 |
1 |
0 |
NAG 3 C NAG 3 E NAG 4 E NAG 5 E
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11 |
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1.63 |
3.23 |
55.8 |
-1.27 |
0.01 |
17.5 |
75 |
9 |
6 |
2 |
11 |
8 |
1 |
0 |
NAG 3 C NAG 4 C NAG 5 C
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program