PDBsum entry 5vui

Pore analysis for: 5vui calculated with

MOLE 2.0

PDB id

5vui

Pores calculated on whole structure

Pores calculated excluding ligands

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3 pores, coloured by radius

11 pores, coloured by radius

11 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

2.04

2.11

36.5

-0.21

0.08

14.0

78

2

2

3

7

4

1

1

HEM 801 B M62 803 B ACT 804 B

2

1.56

1.56

38.9

-1.34

-0.32

14.8

75

4

3

2

2

2

2

2

3

2.02

2.07

40.6

0.07

0.33

7.7

80

1

2

6

8

4

0

1

HEM 801 A M62 803 A ACT 804 A

4

1.74

3.17

45.7

-1.39

-0.42

18.6

77

5

2

3

3

0

1

0

5

2.09

2.14

47.8

-0.72

-0.04

15.1

79

4

2

4

7

4

1

1

HEM 801 B H4B 802 B M62 803 B ACT 804 B

6

2.05

2.09

48.5

-0.47

0.00

14.0

81

4

2

5

8

3

1

1

HEM 801 A H4B 802 A M62 803 A ACT 804 A

7

1.09

1.29

60.4

-2.05

-0.68

23.3

83

7

4

4

1

1

2

0

8

1.25

1.43

68.1

0.57

0.27

7.8

74

2

2

5

11

8

2

2

HEM 801 A H4B 802 A ACT 804 A HEM 801 B H4B 802 B
ACT 804 B

9

1.62

1.77

72.1

-1.21

-0.26

14.1

80

6

3

6

7

4

3

2

HEM 801 B M62 803 B

10

1.23

1.41

74.0

-0.32

0.05

12.2

73

5

3

3

9

8

3

1

HEM 801 A H4B 802 A ACT 804 A HEM 801 B H4B 802 B
M62 803 B

11

1.26

1.44

81.0

-1.06

-0.09

15.7

73

8

5

4

6

8

4

0

HEM 801 A H4B 802 A M62 803 A HEM 801 B H4B 802 B
M62 803 B

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.