PDBsum entry 5vui Go to PDB code:  Tunnel analysis for: 5vui calculated with MOLE 2.0 PDB id 5vui Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.27 1.46 37.2 -0.94 -0.15 13.1 72 4 3 2 4 4 1 0  HEM 801 A H4B 802 A M62 803 A 2 1.25 1.40 38.5 -0.68 -0.07 12.4 72 4 2 2 4 4 1 0  HEM 801 B H4B 802 B M62 803 B 3 1.29 1.46 40.4 0.39 -0.04 6.8 77 1 1 3 7 4 1 1  HEM 801 A H4B 802 A ACT 804 A 4 1.26 1.40 44.4 -0.56 -0.12 13.2 72 3 2 1 5 5 2 1  HEM 801 B H4B 802 B M62 803 B 5 1.26 1.40 56.0 0.13 -0.08 7.1 75 3 2 3 6 4 1 1  HEM 801 B H4B 802 B ACT 804 B Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.