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PDBsum entry 5sdk
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Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 5sdk calculated with MOLE 2.0 PDB id
5sdk
Pores calculated on whole structure Pores calculated excluding ligands
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11 pores, coloured by radius 11 pores, coloured by radius 11 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.00 2.67 49.1 -1.48 0.10 23.6 74 7 4 0 4 6 1 0  I87 801 A I87 801 B
2 2.00 2.65 60.9 -1.14 -0.01 18.2 75 6 6 3 8 7 0 0  I87 801 A I87 801 B
3 2.07 2.27 74.3 -0.69 0.09 15.8 75 6 7 5 11 9 1 0  I87 801 A I87 801 B
4 1.73 1.77 75.9 -1.25 -0.03 21.9 75 6 7 4 8 7 2 0  I87 801 A I87 801 B
5 1.73 1.76 78.8 -1.75 -0.30 24.2 79 6 7 5 8 3 1 0  
6 2.00 2.69 87.9 -0.91 0.07 16.2 75 7 6 4 7 8 2 0  I87 801 A I87 801 B
7 2.01 2.74 111.9 -1.11 0.01 16.1 75 12 9 6 9 12 1 0  I87 801 A I87 801 B
8 2.12 2.33 111.0 -0.81 -0.04 16.3 78 6 8 7 11 6 2 0  I87 801 A I87 801 B
9 1.80 1.83 112.6 -1.34 -0.16 21.5 80 6 9 6 8 3 3 0  I87 801 A I87 801 B
10 2.02 2.05 136.6 -1.36 -0.13 19.6 79 11 11 8 10 7 2 0  I87 801 A I87 801 B
11 2.05 2.24 139.0 -0.95 -0.05 15.4 76 11 11 8 14 11 2 0  I87 801 A I87 801 B

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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