PDBsum entry 5kd7 Go to PDB code:  Pore analysis for: 5kd7 calculated with MOLE 2.0 PDB id 5kd7 Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   25 pores, coloured by radius 26 pores, coloured by radius 26 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 3.53 3.67 25.3 -2.52 -0.67 29.8 83 8 2 1 2 0 0 0   2 2.59 3.02 45.4 -1.96 -0.38 20.0 78 4 6 2 1 4 2 0   3 2.63 2.70 46.0 -1.73 -0.39 18.1 79 5 5 5 3 3 1 0   4 2.45 2.70 49.1 -1.58 -0.56 18.9 86 6 2 4 3 1 0 0   5 2.73 5.26 58.6 -2.00 -0.50 16.1 79 5 4 4 1 4 1 0   6 1.89 1.89 71.6 -1.14 -0.16 15.5 79 6 5 3 4 3 2 1  EDO 101 D 7 2.67 2.72 91.7 -2.35 -0.70 24.7 83 5 15 6 1 4 1 0   8 2.27 2.47 91.1 -1.53 -0.57 19.4 78 6 6 3 5 2 2 0   9 2.98 3.98 91.9 -1.90 -0.51 20.8 79 6 9 8 5 4 1 0   10 1.70 2.12 94.6 -1.71 -0.46 21.9 79 7 8 7 7 4 2 1  GOL 301 F 11 2.17 2.46 94.2 -1.65 -0.46 25.4 79 7 9 1 4 2 1 0   12 2.26 4.40 97.6 -1.95 -0.35 26.7 82 10 10 7 8 4 2 0   13 2.78 5.32 100.0 -1.98 -0.58 22.5 84 6 10 5 3 3 1 0   14 2.14 2.50 102.0 -1.89 -0.38 30.6 85 11 12 4 6 0 1 0   15 2.78 5.32 111.3 -2.82 -0.83 33.5 81 6 13 4 2 1 0 0   16 2.07 2.49 115.2 -1.82 -0.38 24.9 84 12 14 8 7 4 2 0   17 1.71 2.18 115.6 -1.20 -0.39 10.7 84 6 4 9 8 4 3 0   18 1.77 1.83 114.8 -1.37 -0.54 13.2 86 5 4 6 4 1 2 0   19 1.78 2.25 122.1 -1.57 -0.45 18.6 81 9 12 11 6 7 3 1  GOL 301 F 20 1.75 2.21 128.3 -1.80 -0.44 23.9 86 10 8 8 8 2 3 0   21 2.33 4.33 126.7 -1.16 -0.15 17.2 81 9 9 8 10 5 2 1  EDO 101 D 22 1.73 2.28 131.1 -1.79 -0.60 22.4 83 8 13 7 5 3 2 1  GOL 301 F 23 2.17 2.57 128.5 -1.76 -0.54 21.2 80 6 14 7 5 6 2 0   24 2.08 2.46 140.0 -2.32 -0.49 32.2 82 13 16 8 8 2 1 0   25 1.77 1.74 160.6 -1.13 -0.26 15.3 85 9 7 9 11 3 3 1  EDO 101 D 26 2.09 2.47 202.6 -1.80 -0.33 26.0 82 13 20 10 9 3 2 1  EDO 101 D Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.