PDBsum entry 5k5n Go to PDB code:  Pore analysis for: 5k5n calculated with MOLE 2.0 PDB id 5k5n Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 pores, coloured by radius 6 pores, coloured by radius 6 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.90 5.35 34.7 -2.79 -0.38 21.1 83 8 0 7 1 3 1 0  PTR 216 A PTR 216 B 2 2.16 2.21 36.1 -1.29 -0.37 12.7 82 2 2 2 2 2 1 0   3 2.48 2.58 39.0 -1.24 -0.41 19.0 89 4 4 5 3 1 1 0  6QH 401 B 4 2.84 3.17 40.4 -0.07 0.12 8.5 83 4 0 3 8 3 1 0   5 2.49 2.59 43.7 -1.47 -0.49 19.2 91 6 2 6 4 1 1 0  PTR 216 A PTR 216 B 6QH 401 B 6 1.60 1.58 70.5 -0.78 -0.37 11.4 88 6 1 9 4 4 1 0  PTR 216 A 6QH 4001 A PTR 216 B Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.