PDBsum entry 5k5n Go to PDB code:  Tunnel analysis for: 5k5n calculated with MOLE 2.0 PDB id 5k5n Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   6 tunnels, coloured by tunnel radius 11 tunnels, coloured by tunnel radius 11 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.25 1.41 21.0 -0.36 -0.33 8.3 76 2 0 2 4 2 0 0   2 1.31 2.65 27.9 1.37 0.49 9.8 72 3 1 0 7 1 0 1  6QH 401 B 3 1.31 2.65 30.7 -0.30 -0.04 17.6 78 2 3 3 5 1 0 1  6QH 401 B 4 1.31 2.67 34.9 -0.44 -0.17 16.8 84 3 3 5 6 1 0 1  6QH 401 B 5 1.24 1.40 35.2 -1.46 -0.26 16.6 72 3 1 3 4 4 1 0   6 1.31 2.66 37.3 -0.93 -0.30 17.5 84 7 2 6 6 1 0 1  PTR 216 A PTR 216 B 6QH 401 B 7 1.25 1.41 42.1 -1.14 -0.34 13.7 82 5 1 6 5 4 1 0  PTR 216 A PTR 216 B 8 1.32 2.67 55.6 -1.63 -0.08 19.4 75 8 2 6 5 4 1 1  PTR 216 A PTR 216 B 6QH 401 B 9 1.14 1.42 17.6 0.31 -0.18 8.5 78 2 1 1 2 1 1 1   10 1.55 1.55 17.9 -0.66 -0.30 10.4 77 1 1 2 2 3 0 0   11 1.14 1.42 20.7 -0.14 -0.20 8.7 74 1 1 2 2 3 0 1   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.