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PDBsum entry 5js1
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Pore analysis for: 5js1 calculated with  MOLE 2.0
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PDB id
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5js1
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Pores calculated on whole structure |
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Pores calculated excluding ligands
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6 pores,
coloured by radius |
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6 pores,
coloured by radius
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6 pores,
coloured as in
list below
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Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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2.36 |
3.71 |
26.8 |
-2.76 |
-0.47 |
32.5 |
86 |
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7 |
0 |
1 |
2 |
0 |
1 |
0 |
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2 |
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2.03 |
2.82 |
33.8 |
-1.09 |
-0.23 |
19.0 |
73 |
5 |
0 |
0 |
4 |
0 |
2 |
0 |
A 9 B
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3 |
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2.52 |
2.73 |
36.1 |
-0.93 |
-0.30 |
19.1 |
85 |
5 |
1 |
1 |
1 |
1 |
0 |
0 |
U 1 B U 2 B A 3 B U 4 B C 5 B U 6 B A 9 B
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4 |
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2.03 |
2.78 |
44.1 |
-1.91 |
-0.28 |
25.0 |
75 |
6 |
1 |
3 |
3 |
0 |
3 |
0 |
A 3 B
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5 |
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2.07 |
2.53 |
44.4 |
-0.93 |
-0.31 |
18.4 |
81 |
6 |
2 |
0 |
5 |
0 |
1 |
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A 9 B
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6 |
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1.15 |
1.15 |
55.9 |
-1.60 |
-0.50 |
15.8 |
88 |
2 |
2 |
2 |
5 |
0 |
2 |
0 |
A 3 B
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program