PDBsum entry 5js1 Go to PDB code:  Tunnel analysis for: 5js1 calculated with MOLE 2.0 PDB id 5js1 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   8 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.31 1.50 29.2 -0.58 -0.34 13.5 81 4 1 2 4 2 0 0  A 9 B 2 1.32 1.50 32.0 -0.21 0.18 19.2 79 5 2 2 5 3 0 0   3 1.33 1.50 63.8 -1.01 -0.34 18.9 81 8 2 3 4 3 0 0  U 1 B U 2 B A 3 B U 4 B C 5 B U 6 B A 9 B 4 1.20 1.20 15.2 -2.16 -0.53 13.4 81 2 1 2 0 1 0 0   5 1.21 1.35 20.6 -0.88 -0.40 9.4 82 2 1 4 3 1 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.