PDBsum entry 5ja2

Pore analysis for: 5ja2 calculated with

MOLE 2.0

PDB id

5ja2

Pores calculated on whole structure

Pores calculated excluding ligands

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13 pores, coloured by radius

14 pores, coloured by radius

14 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.62

1.87

26.1

-0.08

-0.19

4.8

74

2

2

3

7

4

2

0

2

1.24

1.24

29.0

0.44

0.12

10.0

77

3

3

2

8

2

3

1

3

1.42

1.59

49.4

-0.14

-0.06

13.6

88

2

4

6

11

0

1

0

4

1.29

1.80

59.0

0.36

0.08

4.2

77

4

3

6

16

6

4

1

5

3.43

4.13

65.6

-2.17

-0.68

24.8

86

5

7

7

6

0

3

0

6

1.40

1.57

86.6

-0.63

-0.20

19.0

87

5

7

5

12

0

2

0

7

1.99

2.37

114.4

-1.35

-0.48

20.9

84

6

12

6

8

0

1

0

8

1.43

1.61

134.7

-0.70

-0.20

18.1

86

5

9

9

18

1

2

0

9

1.99

2.87

150.9

-1.64

-0.49

23.0

85

8

12

10

13

1

4

0

10

1.97

2.88

193.4

-1.25

-0.47

16.7

82

6

10

11

15

2

3

0

11

1.18

1.78

28.9

-0.57

-0.39

6.1

77

2

1

4

2

0

2

0

12

1.24

1.57

30.6

-0.27

-0.07

13.0

80

2

2

0

3

4

0

0

13

2.08

2.42

46.3

-0.73

-0.22

19.2

73

4

4

1

4

2

2

0

14

1.26

1.57

56.7

-0.14

-0.07

13.2

79

3

4

2

8

3

4

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.