PDBsum entry 5ja2 Go to PDB code:  Tunnel analysis for: 5ja2 calculated with MOLE 2.0 PDB id 5ja2 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   9 tunnels, coloured by tunnel radius 9 tunnels, coloured by tunnel radius 9 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.20 3.07 33.2 1.53 0.69 5.7 72 1 1 0 13 3 1 0   2 1.16 1.49 23.5 0.00 0.17 9.9 78 3 0 1 5 2 1 0   3 1.16 1.49 25.1 -0.08 0.08 10.2 75 2 2 1 5 2 1 0   4 1.16 1.49 25.7 0.08 0.22 7.7 74 2 0 2 5 2 1 0   5 1.16 1.49 28.0 -0.78 -0.16 13.4 78 3 1 0 4 3 1 0   6 1.15 1.50 28.6 0.09 -0.33 5.4 82 0 1 1 4 2 2 0   7 1.16 1.49 55.7 -0.38 0.00 13.7 75 4 5 1 8 5 1 0   8 1.25 2.50 15.7 1.41 0.17 4.3 81 1 0 0 6 1 0 0   9 1.30 1.43 17.1 -0.77 -0.35 16.5 87 2 0 0 3 0 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.