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PDBsum entry 5ijc
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Pore analysis for: 5ijc calculated with  MOLE 2.0
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PDB id
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5ijc
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Pores calculated on whole structure |
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Pores calculated excluding ligands
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14 pores,
coloured by radius |
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19 pores,
coloured by radius
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19 pores,
coloured as in
list below
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Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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3.34 |
5.73 |
29.2 |
-3.04 |
-0.71 |
17.3 |
89 |
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5 |
1 |
8 |
0 |
1 |
0 |
0 |
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2 |
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3.84 |
3.85 |
39.4 |
-2.01 |
-0.30 |
26.3 |
82 |
6 |
1 |
5 |
2 |
3 |
1 |
0 |
V2A 709 A V2A 201 D
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3 |
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3.82 |
3.83 |
43.0 |
-2.18 |
-0.36 |
27.3 |
80 |
8 |
2 |
5 |
1 |
3 |
1 |
0 |
V2A 709 A V2A 201 D
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4 |
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2.40 |
2.87 |
47.1 |
-1.99 |
-0.35 |
28.7 |
80 |
6 |
2 |
2 |
2 |
3 |
0 |
0 |
V2A 701 B V2A 702 B
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5 |
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1.51 |
3.12 |
47.7 |
-0.40 |
-0.03 |
15.4 |
80 |
4 |
1 |
4 |
6 |
4 |
1 |
0 |
V2A 701 B V2A 702 B
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6 |
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1.23 |
1.40 |
49.4 |
1.03 |
0.44 |
7.3 |
72 |
3 |
1 |
5 |
9 |
8 |
2 |
0 |
V2A 709 A V2A 201 D
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7 |
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1.53 |
3.12 |
52.5 |
-0.60 |
0.22 |
22.0 |
78 |
6 |
1 |
3 |
7 |
5 |
1 |
0 |
V2A 701 B V2A 702 B
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8 |
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1.25 |
1.38 |
53.9 |
0.51 |
0.33 |
14.9 |
70 |
8 |
2 |
0 |
10 |
8 |
1 |
0 |
V2A 709 A V2A 201 D
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9 |
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1.50 |
2.41 |
54.0 |
-0.10 |
0.17 |
12.8 |
80 |
4 |
2 |
9 |
6 |
7 |
2 |
0 |
NAG 705 A V2A 709 A V2A 201 D
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10 |
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1.54 |
2.42 |
56.7 |
-0.16 |
0.18 |
18.3 |
80 |
8 |
2 |
4 |
7 |
5 |
1 |
0 |
NAG 705 A V2A 709 A V2A 201 D
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11 |
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1.24 |
1.38 |
57.2 |
2.12 |
0.76 |
4.4 |
71 |
2 |
1 |
3 |
14 |
10 |
2 |
0 |
NAG 705 A V2A 709 A V2A 201 D
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12 |
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3.36 |
5.77 |
57.0 |
-2.80 |
-0.48 |
23.2 |
79 |
7 |
3 |
7 |
0 |
4 |
0 |
0 |
NAG 2 F
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13 |
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1.32 |
1.47 |
62.0 |
0.40 |
0.35 |
15.4 |
68 |
7 |
1 |
0 |
10 |
9 |
1 |
0 |
V2A 701 B V2A 702 B
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14 |
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2.41 |
2.90 |
63.5 |
-2.51 |
-0.48 |
28.4 |
81 |
11 |
3 |
6 |
1 |
3 |
0 |
0 |
V2A 701 B V2A 702 B
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15 |
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1.51 |
2.36 |
68.9 |
-1.55 |
-0.10 |
24.1 |
80 |
11 |
2 |
7 |
6 |
5 |
1 |
0 |
V2A 701 B V2A 702 B
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16 |
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2.40 |
2.96 |
69.7 |
-2.54 |
-0.54 |
24.0 |
83 |
10 |
3 |
8 |
1 |
4 |
0 |
0 |
V2A 701 B V2A 702 B
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17 |
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1.52 |
3.12 |
75.1 |
-1.74 |
-0.22 |
19.4 |
81 |
10 |
2 |
9 |
6 |
6 |
1 |
0 |
V2A 701 B V2A 702 B
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18 |
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1.83 |
2.31 |
25.1 |
-1.74 |
-0.27 |
24.7 |
84 |
4 |
5 |
2 |
4 |
1 |
0 |
0 |
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19 |
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1.84 |
2.32 |
56.1 |
-1.87 |
-0.26 |
21.8 |
84 |
3 |
5 |
7 |
6 |
3 |
0 |
0 |
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program