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PDBsum entry 5ef5
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Tunnel analysis for: 5ef5 calculated with  MOLE 2.0
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PDB id
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5ef5
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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5 tunnels,
coloured by tunnel radius |
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5 tunnels,
coloured by
tunnel radius
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5 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.45 |
1.45 |
18.4 |
-0.40 |
-0.80 |
3.4 |
0 |
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0 |
0 |
0 |
0 |
0 |
0 |
0 |
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UNK 1519 A UNK 1521 A UNK 4575 A UNK 4576 A UNK
4577 A UNK 4578 A UNK 4582 A UNK 4583 A UNK 4601
A UNK 4603 A UNK 4605 A
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2 |
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1.49 |
1.49 |
22.9 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
UNK 1523 A UNK 4553 A UNK 4559 A UNK 4573 A UNK
4574 A UNK 4575 A UNK 4577 A UNK 4582 A UNK 4583
A UNK 4586 A UNK 4597 A UNK 4599 A UNK 4600 A UNK
4601 A UNK 4609 A UNK 4618 A UNK 4619 A UNK 4620 A
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3 |
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1.33 |
1.33 |
28.6 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
UNK 4539 A UNK 4540 A UNK 4541 A UNK 4553 A UNK
4575 A UNK 4577 A UNK 4582 A UNK 4583 A UNK 4584
A UNK 4585 A UNK 4586 A UNK 4599 A UNK 4600 A UNK
4601 A UNK 4674 A UNK 4722 A UNK 4764 A UNK 4766 A
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4 |
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1.49 |
1.49 |
28.9 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
UNK 4544 A UNK 4547 A UNK 4549 A UNK 4551 A UNK
4553 A UNK 4559 A UNK 4575 A UNK 4577 A UNK 4582
A UNK 4583 A UNK 4586 A UNK 4588 A UNK 4595 A UNK
4596 A UNK 4597 A UNK 4599 A UNK 4600 A UNK 4601
A UNK 4612 A UNK 4613 A
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5 |
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1.35 |
1.35 |
42.1 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
UNK 4540 A UNK 4541 A UNK 4542 A UNK 4545 A UNK
4553 A UNK 4575 A UNK 4577 A UNK 4582 A UNK 4583
A UNK 4585 A UNK 4586 A UNK 4587 A UNK 4599 A UNK
4600 A UNK 4601 A UNK 4635 A UNK 4680 A UNK 4724
A UNK 4770 A UNK 4809 A UNK 1551 E UNK 1553 E UNK
1555 E
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program