PDBsum entry 5d4t Go to PDB code:  Pore analysis for: 5d4t calculated with MOLE 2.0 PDB id 5d4t Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   10 pores, coloured by radius 8 pores, coloured by radius 8 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.79 2.72 51.9 -1.90 -0.55 33.6 80 4 9 0 5 0 0 0  MSE 13 G 2 1.31 1.59 38.0 -0.77 -0.22 8.7 75 1 2 3 8 4 0 0   3 1.54 1.77 40.6 0.84 0.50 8.3 78 1 1 1 6 2 0 0   4 2.63 4.20 42.8 -2.02 -0.33 30.1 87 6 7 6 6 0 0 0   5 3.04 4.85 39.1 -2.45 -0.41 35.9 87 4 6 5 6 0 0 0   6 2.49 2.59 31.5 1.48 0.76 6.9 78 2 1 1 6 3 0 0   7 1.61 1.76 34.6 -0.32 -0.13 9.6 82 1 2 2 5 2 0 0   8 1.55 1.70 66.3 -0.70 -0.12 9.2 80 3 2 3 7 3 0 0  MSE 65 G Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.