PDBsum entry 5d4t Go to PDB code:  Tunnel analysis for: 5d4t calculated with MOLE 2.0 PDB id 5d4t Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   6 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.67 1.82 30.2 -1.46 0.07 14.3 69 4 2 1 1 6 0 0   2 1.61 1.63 30.9 -1.47 0.00 14.8 70 5 2 1 1 6 0 0   3 1.68 1.82 31.0 -1.30 0.16 13.4 66 4 1 1 2 6 0 0   4 1.25 1.32 31.0 -1.57 0.03 15.1 70 5 2 1 1 6 0 0   5 1.62 1.65 31.7 -1.28 0.13 13.1 67 5 1 1 2 6 0 0   6 1.25 1.31 31.8 -1.45 0.13 14.5 67 5 1 1 2 6 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.