PDBsum entry 5d2d Go to PDB code:  Tunnel analysis for: 5d2d calculated with MOLE 2.0 PDB id 5d2d Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 tunnels, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.36 1.38 21.6 -1.10 0.17 20.1 76 5 1 2 3 3 0 0  SEP 768 C 2 1.22 1.26 25.1 -0.72 0.25 19.6 76 5 1 2 5 3 0 0  SEP 768 C 3 1.19 1.19 20.0 -0.30 0.18 20.3 72 2 2 0 3 2 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.