PDBsum entry 5af7 Go to PDB code:  Tunnel analysis for: 5af7 calculated with MOLE 2.0 PDB id 5af7 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   2 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.49 1.58 38.4 -0.86 -0.43 9.3 86 2 2 4 3 4 0 0  FAD 410 A 2 1.49 1.58 49.4 -0.53 -0.16 10.9 85 4 2 2 10 4 0 0  FAD 410 A GOL 510 A 3 1.22 1.67 22.1 -1.46 -0.49 23.7 83 2 4 1 3 0 0 2   4 1.23 1.56 22.0 -1.61 -0.52 24.5 83 2 4 1 3 0 0 2   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.