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PDBsum entry 4x4t
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Tunnel analysis for: 4x4t calculated with  MOLE 2.0
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PDB id
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4x4t
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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16 tunnels,
coloured by tunnel radius |
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18 tunnels,
coloured by
tunnel radius
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18 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.15 |
1.26 |
33.0 |
-1.69 |
-0.66 |
19.4 |
72 |
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2 |
3 |
1 |
0 |
2 |
1 |
0 |
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DG 5 G DC 6 G DG 7 G DC 25 G DG 26 G DC 27 G DG
28 G DA 29 G
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2 |
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1.14 |
1.30 |
36.6 |
-1.26 |
-0.44 |
17.1 |
73 |
4 |
3 |
1 |
1 |
1 |
1 |
0 |
DC 6 G DC 25 G DG 26 G DC 27 G DG 28 G DA 29 G DC
1 H DG 2 H
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3 |
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1.15 |
1.31 |
42.1 |
-1.36 |
-0.42 |
16.5 |
77 |
4 |
2 |
2 |
1 |
1 |
1 |
0 |
DC 6 G DC 25 G DG 26 G DC 27 G DG 28 G DA 29 G DC
1 H DG 2 H
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4 |
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1.15 |
1.27 |
48.2 |
-1.73 |
-0.41 |
20.4 |
78 |
5 |
4 |
3 |
2 |
2 |
2 |
0 |
DG 5 G DC 25 G DG 26 G DC 27 G DA 29 G
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5 |
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1.13 |
1.28 |
56.0 |
-1.29 |
-0.38 |
14.2 |
79 |
4 |
3 |
3 |
2 |
1 |
1 |
0 |
U 19 D DC 6 G DC 25 G DG 26 G DC 27 G DG 28 G DA
29 G DC 1 H
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6 |
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1.13 |
1.26 |
64.3 |
-1.64 |
-0.51 |
19.5 |
78 |
4 |
5 |
3 |
2 |
1 |
1 |
0 |
C 6 D G 7 D U 19 D C 20 D DC 6 G DC 25 G DG 26 G
DC 27 G DG 28 G DA 29 G
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7 |
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1.13 |
1.29 |
67.4 |
-1.72 |
-0.39 |
21.3 |
81 |
7 |
5 |
5 |
2 |
2 |
1 |
0 |
G 12 D 5BU 13 D U 14 D U 19 D C 20 D DC 6 G DC 25
G DG 26 G DC 27 G DG 28 G DA 29 G
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8 |
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1.13 |
1.29 |
73.2 |
-1.72 |
-0.44 |
21.8 |
74 |
10 |
5 |
2 |
1 |
2 |
1 |
0 |
DG 1 G DG 2 G DC 3 G DC 6 G DC 24 G DC 25 G DG 26
G DC 27 G DG 28 G DA 29 G
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9 |
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1.13 |
1.29 |
73.9 |
-1.66 |
-0.58 |
19.6 |
79 |
6 |
8 |
4 |
2 |
1 |
1 |
0 |
G 5 D C 6 D U 19 D C 20 D C 21 D DC 6 G DC 25 G
DG 26 G DC 27 G DG 28 G DA 29 G
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10 |
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1.14 |
1.30 |
77.8 |
-2.02 |
-0.49 |
26.3 |
78 |
11 |
8 |
3 |
1 |
2 |
1 |
0 |
DG 1 G DC 6 G DC 25 G DG 26 G DC 27 G DG 28 G DA
29 G
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11 |
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1.14 |
1.30 |
79.6 |
-1.82 |
-0.41 |
22.9 |
78 |
11 |
5 |
3 |
1 |
2 |
1 |
0 |
GOL 503 A DG 1 G DC 6 G DC 25 G DG 26 G DC 27 G
DG 28 G DA 29 G
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12 |
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1.13 |
1.29 |
80.0 |
-1.78 |
-0.42 |
22.0 |
79 |
11 |
5 |
3 |
1 |
2 |
1 |
0 |
GOL 503 A DG 1 G DC 6 G DG 23 G DC 25 G DG 26 G
DC 27 G DG 28 G DA 29 G
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13 |
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1.20 |
1.35 |
95.4 |
-2.03 |
-0.49 |
26.9 |
79 |
13 |
8 |
3 |
3 |
1 |
1 |
0 |
DG 1 G DC 6 G DC 25 G DG 26 G DC 27 G DG 28 G DA
29 G
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14 |
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1.23 |
1.36 |
100.4 |
-2.04 |
-0.49 |
26.2 |
80 |
14 |
8 |
4 |
2 |
1 |
1 |
0 |
DG 1 G DC 6 G DC 25 G DG 26 G DC 27 G DG 28 G DA
29 G
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15 |
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1.23 |
1.36 |
111.8 |
-1.96 |
-0.51 |
24.3 |
84 |
15 |
7 |
5 |
2 |
2 |
1 |
0 |
GOL 502 A G 12 B 5BU 13 B U 14 B C 20 B PEG 501 E
DG 1 G DC 6 G DG 23 G DC 25 G DG 26 G DC 27 G DG
28 G DA 29 G DG 1 I
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16 |
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1.32 |
1.47 |
15.1 |
-0.33 |
-0.09 |
8.7 |
56 |
1 |
0 |
0 |
0 |
1 |
2 |
1 |
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17 |
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1.39 |
2.62 |
18.3 |
-0.12 |
0.20 |
16.9 |
72 |
1 |
2 |
0 |
3 |
2 |
1 |
0 |
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18 |
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1.55 |
1.69 |
19.7 |
-2.37 |
-0.63 |
27.9 |
80 |
2 |
3 |
1 |
0 |
1 |
0 |
0 |
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program