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PDBsum entry 4uke

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Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 4uke calculated with MOLE 2.0 PDB id
4uke
Pores calculated on whole structure Pores calculated excluding ligands

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18 pores, coloured by radius 18 pores, coloured by radius 18 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.13 1.37 28.6 -1.38 -0.49 12.4 86 5 0 3 2 0 1 0  
2 2.62 2.62 49.1 -2.05 -0.59 21.1 90 7 1 7 2 0 0 0  
3 2.14 2.34 54.8 -2.63 -0.27 27.5 81 10 1 5 0 3 0 0  
4 2.62 2.62 58.7 -2.37 -0.33 26.3 82 8 1 4 2 2 0 0  
5 1.58 2.92 28.3 -1.20 -0.13 19.7 66 4 1 1 0 1 1 3  
6 1.85 1.85 31.0 0.07 0.09 7.6 63 3 0 1 1 2 1 3  
7 1.85 1.85 34.3 -0.45 -0.06 13.3 67 2 1 1 1 2 1 1  
8 1.69 2.90 46.6 -1.84 -0.22 22.2 71 5 1 3 0 2 1 3  
9 1.27 2.78 48.7 -0.29 -0.10 9.6 86 4 0 2 4 1 0 0  
10 1.21 1.39 34.9 -1.04 -0.21 17.3 85 7 0 1 5 0 0 0  OHX 101 d
11 1.47 1.47 26.2 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  UNK 81 C UNK 82 C UNK 84 C UNK 85 C UNK 106 C UNK
109 C UNK 110 C UNK 112 C UNK 113 C UNK 128 C UNK
131 C UNK 134 C UNK 135 C UNK 137 C UNK 142 C UNK
143 C UNK 148 C UNK 149 C UNK 151 C UNK 152 C UNK
153 C
12 1.54 1.54 26.8 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  UNK 107 C UNK 110 C UNK 127 C UNK 130 C UNK 134 C
UNK 137 C UNK 138 C UNK 140 C UNK 142 C UNK 143 C
UNK 147 C UNK 151 C UNK 153 C UNK 155 C UNK 157 C
UNK 158 C UNK 159 C
13 1.57 1.57 28.2 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  UNK 81 C UNK 82 C UNK 84 C UNK 85 C UNK 106 C UNK
107 C UNK 109 C UNK 110 C UNK 112 C UNK 113 C UNK
127 C UNK 130 C UNK 134 C UNK 137 C UNK 142 C UNK
143 C UNK 151 C UNK 153 C UNK 155 C UNK 157 C UNK
158 C UNK 159 C
14 1.47 1.47 31.2 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  UNK 78 C UNK 82 C UNK 106 C UNK 110 C UNK 113 C
UNK 117 C UNK 128 C UNK 131 C UNK 133 C UNK 134 C
UNK 135 C UNK 137 C UNK 142 C UNK 143 C UNK 148 C
UNK 149 C UNK 151 C UNK 152 C UNK 153 C
15 1.55 1.55 33.2 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  UNK 78 C UNK 82 C UNK 106 C UNK 107 C UNK 110 C
UNK 113 C UNK 117 C UNK 127 C UNK 130 C UNK 133 C
UNK 134 C UNK 137 C UNK 142 C UNK 143 C UNK 151 C
UNK 153 C UNK 155 C UNK 157 C UNK 158 C UNK 159 C
16 1.18 1.20 25.7 0.58 0.28 9.5 85 3 0 1 5 3 0 0  
17 1.28 1.71 59.5 -0.93 -0.16 17.1 76 5 2 3 2 7 0 0  
18 1.60 1.83 34.5 -3.94 -0.37 46.2 83 7 0 1 1 0 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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