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PDBsum entry 4tot

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Top Page protein ligands Protein-protein interface(s) pores links
Pore analysis for: 4tot calculated with MOLE 2.0 PDB id
4tot
Pores calculated on whole structure Pores calculated excluding ligands

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2 pores, coloured by radius 8 pores, coloured by radius 8 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.40 2.41 38.7 -0.43 0.41 12.6 72 4 1 1 4 3 0 0  DAL 1 F MLE 2 F MLE 3 F MVA 4 F BMT 5 F ABA 6 F
33X 7 F 34E 8 F MLE 10 F DAL 1 H MLE 2 H MLE 3 H
2 2.40 2.41 45.9 -0.35 0.17 10.8 75 6 0 1 5 3 0 0  DAL 1 F MLE 2 F MLE 3 F MVA 4 F BMT 5 F ABA 6 F
33X 7 F 34E 8 F MLE 10 F DAL 1 H MLE 2 H MLE 3 H
MVA 4 H BMT 5 H 34E 8 H MLE 10 H
3 2.47 2.87 49.8 -0.30 0.08 11.1 78 5 2 2 5 4 1 0  DAL 1 F MLE 2 F DAL 1 H MLE 2 H MLE 3 H
4 2.65 3.09 51.5 -0.24 -0.04 11.7 82 4 1 2 7 3 1 0  DAL 1 F MLE 2 F 33X 7 G 34E 8 G DAL 1 H MLE 2 H
MLE 3 H MVA 4 H BMT 5 H 34E 8 H MLE 10 H
5 2.39 2.39 57.1 -0.44 -0.10 12.3 80 4 2 4 6 4 1 0  DAL 1 F MLE 2 F MLE 3 F MVA 4 F BMT 5 F ABA 6 F
33X 7 F 34E 8 F MLE 10 F DAL 1 H MLE 2 H
6 1.58 1.65 57.3 -0.80 -0.03 15.3 79 6 0 3 4 3 0 0  DAL 1 F MLE 2 F DAL 1 H MLE 2 H MLE 3 H MVA 4 H
BMT 5 H 34E 8 H MLE 10 H
7 2.40 2.41 67.3 -0.11 -0.17 9.3 82 5 1 3 8 4 1 0  DAL 1 F MLE 2 F MLE 3 F MVA 4 F BMT 5 F ABA 6 F
33X 7 F 34E 8 F MLE 10 F ABA 6 G 33X 7 G 34E 8 G
DAL 1 H MLE 2 H
8 1.54 1.84 27.5 -1.83 -0.14 25.6 72 2 4 0 1 2 0 0  P6G 201 A

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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