 |
PDBsum entry 4pv1
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Pore analysis for: 4pv1 calculated with  MOLE 2.0
|
PDB id
|
|
|
|
4pv1
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Pores calculated on whole structure |
|
Pores calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
7 pores,
coloured by radius |
|
17 pores,
coloured by radius
|
17 pores,
coloured as in
list below
|
|
|
|
|
|
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
2.86 |
3.53 |
26.5 |
2.13 |
0.55 |
0.9 |
84 |
|
0 |
0 |
0 |
12 |
2 |
2 |
0 |
|
CLA 204 B
|
 |
|
2 |
 |
2.10 |
2.43 |
26.9 |
1.87 |
0.60 |
1.1 |
71 |
0 |
0 |
0 |
9 |
4 |
1 |
0 |
7PH 309 A 8K6 201 B OPC 203 D
|
|
3 |
 |
1.86 |
3.22 |
43.1 |
1.40 |
0.62 |
8.7 |
80 |
4 |
0 |
0 |
11 |
5 |
0 |
0 |
HEC 304 A HEC 305 A SMA 308 A CLA 204 B
|
|
4 |
 |
1.71 |
4.93 |
44.1 |
-1.33 |
-0.38 |
21.1 |
81 |
3 |
8 |
1 |
4 |
1 |
2 |
0 |
OPC 101 E
|
|
5 |
 |
2.25 |
2.25 |
48.9 |
-1.25 |
-0.44 |
20.7 |
78 |
1 |
8 |
2 |
4 |
1 |
3 |
0 |
OPC 101 E
|
|
6 |
 |
1.85 |
1.85 |
50.6 |
1.60 |
0.67 |
7.9 |
83 |
4 |
0 |
0 |
18 |
3 |
2 |
0 |
HEC 304 A HEC 305 A SMA 308 A CLA 204 B
|
|
7 |
 |
1.73 |
3.80 |
62.7 |
0.49 |
0.23 |
9.3 |
85 |
2 |
5 |
0 |
16 |
3 |
3 |
0 |
CLA 204 B
|
|
8 |
 |
2.12 |
2.33 |
62.8 |
1.04 |
0.31 |
7.0 |
82 |
0 |
4 |
2 |
15 |
5 |
1 |
0 |
CLA 204 B OPC 205 B
|
|
9 |
 |
2.11 |
3.08 |
72.9 |
0.36 |
0.09 |
9.5 |
81 |
1 |
8 |
2 |
14 |
6 |
2 |
0 |
CLA 204 B OPC 205 B OPC 101 E
|
|
10 |
 |
1.21 |
3.30 |
74.2 |
1.90 |
0.83 |
6.5 |
77 |
3 |
4 |
2 |
25 |
5 |
1 |
2 |
HEC 305 A SMA 308 A OPC 101 E BCR 101 G
|
|
11 |
 |
1.19 |
3.33 |
74.4 |
1.16 |
0.54 |
5.3 |
79 |
4 |
1 |
3 |
16 |
6 |
2 |
1 |
HEC 305 A SMA 308 A BCR 101 G
|
|
12 |
|
2.11 |
3.12 |
74.0 |
0.12 |
0.08 |
10.2 |
81 |
1 |
8 |
1 |
16 |
4 |
5 |
0 |
CLA 204 B OPC 101 E
|
|
13 |
|
1.60 |
1.57 |
87.0 |
0.73 |
0.48 |
5.3 |
72 |
3 |
3 |
4 |
19 |
7 |
3 |
1 |
OPC 101 E BCR 101 G
|
|
14 |
|
1.16 |
1.41 |
112.8 |
0.25 |
0.20 |
9.1 |
72 |
2 |
6 |
5 |
21 |
7 |
5 |
1 |
OPC 101 E BCR 101 G
|
|
15 |
|
1.19 |
3.04 |
113.4 |
0.95 |
0.34 |
2.5 |
76 |
2 |
0 |
3 |
19 |
8 |
4 |
0 |
CLA 204 B BCR 101 G
|
|
16 |
|
1.12 |
1.29 |
28.0 |
-0.15 |
-0.37 |
5.6 |
72 |
1 |
0 |
1 |
4 |
1 |
1 |
1 |
|
 |
17 |
|
1.16 |
3.02 |
39.2 |
0.98 |
0.25 |
7.3 |
80 |
3 |
1 |
1 |
6 |
2 |
1 |
0 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program