 |
PDBsum entry 4l6d
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnel analysis for: 4l6d calculated with  MOLE 2.0
|
PDB id
|
|
|
|
4l6d
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnels calculated on whole structure |
|
Tunnels calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
5 tunnels,
coloured by tunnel radius |
|
6 tunnels,
coloured by
tunnel radius
|
6 tunnels,
coloured as in
list below
|
|
|
|
|
|
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.56 |
2.08 |
15.3 |
-1.78 |
-0.50 |
20.2 |
86 |
|
4 |
0 |
2 |
1 |
0 |
0 |
0 |
|
|
 |
|
2 |
 |
1.63 |
1.76 |
17.0 |
-2.91 |
-0.62 |
27.3 |
87 |
5 |
0 |
2 |
0 |
0 |
0 |
0 |
|
|
3 |
 |
1.32 |
1.43 |
22.3 |
-1.94 |
-0.62 |
24.8 |
85 |
3 |
2 |
3 |
3 |
0 |
1 |
0 |
|
|
4 |
 |
1.31 |
1.42 |
26.8 |
-1.76 |
-0.53 |
21.5 |
86 |
3 |
2 |
4 |
4 |
0 |
1 |
0 |
|
|
5 |
 |
1.75 |
1.75 |
17.6 |
-0.28 |
-0.20 |
8.1 |
86 |
1 |
0 |
2 |
5 |
0 |
1 |
0 |
MN 406 A
|
 |
6 |
 |
1.76 |
1.76 |
15.7 |
-0.82 |
-0.42 |
3.7 |
93 |
1 |
0 |
1 |
2 |
0 |
1 |
0 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program