PDBsum entry 4l3v

Pore analysis for: 4l3v calculated with

MOLE 2.0

PDB id

4l3v

Pores calculated on whole structure

Pores calculated excluding ligands

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with HETATM:

without HETATM:

8 pores, coloured by radius

10 pores, coloured by radius

10 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.34

2.31

26.4

0.96

0.50

12.9

82

3

2

1

8

1

0

0

2

1.75

3.16

27.4

-1.77

-0.39

25.5

74

5

2

1

2

0

1

0

3

2.26

3.51

29.1

-2.44

-0.54

31.4

83

7

2

1

1

0

1

0

HEM 602 C

4

1.40

2.14

41.6

-0.23

0.31

18.6

76

7

2

1

9

2

1

0

5

1.30

2.10

42.0

-0.41

0.14

20.6

76

5

4

2

9

2

1

0

6

1.51

1.66

66.7

-1.46

-0.19

21.6

78

8

2

3

4

2

3

1

HEM 602 B

7

1.67

1.95

69.3

-1.62

-0.21

20.4

78

6

4

4

4

2

2

1

HEM 602 B

8

1.38

1.57

40.5

-1.91

-0.69

24.6

85

7

4

3

2

0

0

0

9

1.77

3.20

26.8

-1.23

-0.08

29.9

73

4

3

0

4

1

0

0

10

1.81

2.09

25.8

-1.38

-0.55

16.7

87

2

2

1

1

1

0

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.