 |
PDBsum entry 4jvm
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
|
|
|
|
|
|
|
|
|
|
Pore analysis for: 4jvm calculated with MOLE 2.0
|
PDB id
|
|
|
|
4jvm
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
Pores calculated on whole structure |
 |
Pores calculated excluding ligands
|
|
|
 |
 |
 |
 |
 |
|
 |
|
|
|
 |
 |
|
 |
|
|
|
 |
0 pores,
coloured by radius |
 |
3 pores,
coloured by radius
|
3 pores,
coloured as in list below
|
|
|
 |
 |
 |
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
|
|
 |
|
|
|
 |
Free R
|
 |
|
|
|
|
 |
Length
|
 |
|
|
|
|
 |
HPathy
|
 |
|
|
|
|
 |
HPhob
|
 |
|
|
|
|
 |
Polar
|
 |
|
|
|
|
 |
Rel Mut
|
 |
|
|
|
|
 |
Residue..type
|
 |
|
|
|
|
 |
Ligands
|
 |
|
|
|
|
|
 |
Radius |
 |
1 |
 |
2.27 |
2.56 |
36.3 |
-1.33 |
-0.39 |
16.7 |
75 |
 |
1 |
2 |
3 |
4 |
2 |
1 |
0 |
 |
XDI 301 B
|
 |
 |
2 |
 |
1.93 |
4.38 |
37.0 |
0.06 |
0.37 |
11.9 |
73 |
6 |
1 |
1 |
7 |
8 |
0 |
1 |
XDI 301 B A3P 302 B
|
 |
3 |
 |
1.90 |
3.83 |
35.5 |
-0.10 |
0.40 |
11.0 |
76 |
5 |
0 |
2 |
6 |
7 |
0 |
1 |
XDI 501 A A3P 502 A
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
Residue-type_colouring |
 |
|
 |
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
 |