spacer
spacer

PDBsum entry 4jvm

Go to PDB code: 
Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 4jvm calculated with MOLE 2.0 PDB id
4jvm
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
0 pores, coloured by radius 3 pores, coloured by radius 3 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.27 2.56 36.3 -1.33 -0.39 16.7 75 1 2 3 4 2 1 0  XDI 301 B
2 1.93 4.38 37.0 0.06 0.37 11.9 73 6 1 1 7 8 0 1  XDI 301 B A3P 302 B
3 1.90 3.83 35.5 -0.10 0.40 11.0 76 5 0 2 6 7 0 1  XDI 501 A A3P 502 A

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer