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PDBsum entry 4js5

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Top Page protein dna_rna ligands Protein-protein interface(s) pores links
Pore analysis for: 4js5 calculated with MOLE 2.0 PDB id
4js5
Pores calculated on whole structure Pores calculated excluding ligands

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7 pores, coloured by radius 7 pores, coloured by radius 7 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.40 1.40 31.4 -1.31 -0.29 21.6 83 5 1 0 2 1 0 0  DT 4 D DT 7 D DT 8 D DT 9 D DT 10 D DT 11 D
2 1.35 1.44 39.1 -0.40 -0.23 12.8 84 5 0 1 4 0 0 0  DT 4 D DT 7 D DT 8 D DT 10 D DT 11 D
3 1.76 1.76 40.8 -1.32 -0.56 9.0 83 2 1 4 2 1 2 0  DT 4 D DT 7 D DT 10 D
4 2.63 2.82 42.4 -0.77 -0.45 9.4 85 1 3 4 2 1 1 0  DT 2 C DT 4 C DT 6 C
5 1.28 1.49 44.5 0.19 0.10 8.3 75 1 2 3 4 3 0 0  DT 7 D
6 1.48 1.48 77.0 -1.05 -0.38 13.2 76 6 5 5 6 5 2 0  DT 2 D DT 4 D DT 7 D DT 8 D DT 9 D DT 10 D
7 1.44 1.94 62.6 -0.24 -0.09 7.6 75 4 1 1 4 2 0 0  DT 8 C DT 9 C

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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