PDBsum entry 4j4b

Pore analysis for: 4j4b calculated with

MOLE 2.0

PDB id

4j4b

Pores calculated on whole structure

Pores calculated excluding ligands

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without HETATM:

4 pores, coloured by radius

11 pores, coloured by radius

11 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

2.12

2.14

39.8

-1.12

-0.34

12.0

79

2

6

2

4

1

4

1

NAI 901 A

2

2.80

2.84

42.5

-0.88

-0.33

11.8

80

1

7

0

4

0

4

1

NAI 901 A NAI 302 B

3

2.10

2.15

43.9

0.04

-0.02

8.3

78

1

3

3

9

2

3

1

NAI 901 A 0TF 904 A

4

1.83

1.95

44.9

0.86

0.18

5.8

80

0

3

2

7

2

2

1

0TF 301 B NAI 302 B

5

2.09

2.13

46.2

0.28

0.10

6.7

81

2

0

3

8

2

3

0

NAI 901 A 0TF 904 A

6

2.80

2.84

47.9

-1.04

-0.35

13.4

81

2

6

0

4

0

5

0

NAI 901 A NAI 302 B

7

2.13

3.80

50.3

-1.02

-0.39

10.5

83

0

8

3

5

1

5

1

NAI 302 B

8

2.09

2.13

54.6

0.28

0.04

6.4

82

1

3

3

10

2

4

0

NAI 901 A 0TF 904 A NAI 302 B

9

2.10

2.13

61.3

-0.11

-0.10

6.7

79

1

5

5

11

3

5

1

NAI 901 A 0TF 904 A

10

2.80

2.84

61.9

-1.38

-0.35

16.9

82

3

6

2

4

1

5

0

NAI 901 A NAI 302 B

11

2.04

2.06

65.9

-0.13

-0.12

6.1

79

1

5

6

11

3

6

1

0TF 301 B NAI 302 B

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.