PDBsum entry 4f8b

Tunnel analysis for: 4f8b calculated with

MOLE 2.0

PDB id

4f8b

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

10 tunnels, coloured by tunnel radius

6 tunnels, coloured by tunnel radius

6 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.13

1.51

32.5

-1.16

-0.11

14.6

72

5

2

1

0

5

1

0

2

1.65

1.71

15.6

0.56

0.13

11.7

74

1

1

0

2

1

0

1

3

1.43

1.70

19.0

-0.49

-0.05

17.4

77

4

2

2

1

3

0

1

GD1 201 B

4

1.42

1.69

26.3

-0.67

-0.17

20.8

77

2

3

1

1

2

0

1

GD1 201 B

5

1.18

2.97

19.7

1.64

0.66

1.8

79

1

0

1

7

2

1

0

6

1.19

2.96

21.7

1.63

0.65

1.7

77

0

1

1

7

3

1

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.