PDBsum entry 4d9c

Pore analysis for: 4d9c calculated with

MOLE 2.0

PDB id

4d9c

Pores calculated on whole structure

Pores calculated excluding ligands

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3 pores, coloured by radius

10 pores, coloured by radius

10 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.85

2.04

43.7

-1.52

-0.38

21.4

82

5

6

3

5

1

2

0

2

1.21

1.21

49.8

-1.10

-0.38

13.3

85

5

3

5

6

2

1

0

PMP 401 B

3

1.24

1.42

52.5

0.03

0.20

12.5

80

3

5

1

10

2

0

0

BEN 402 C

4

1.24

1.41

57.5

-0.40

-0.16

16.1

79

3

5

1

8

2

0

0

BEN 402 C

5

1.19

1.39

57.5

-0.89

-0.32

13.3

86

5

4

5

8

2

1

0

PMP 402 A

6

1.09

1.64

71.8

-0.42

0.00

17.4

69

2

9

0

10

4

1

0

7

1.23

1.39

72.1

-1.07

-0.32

9.4

87

6

4

10

6

4

2

0

PMP 402 A PMP 401 B

8

1.23

1.72

98.6

-0.68

-0.22

17.4

77

5

10

3

12

2

2

0

9

1.17

1.37

37.1

-0.98

-0.33

8.8

86

3

2

4

4

2

1

0

PMP 401 C

10

1.23

1.23

46.7

-0.22

-0.23

5.2

89

2

2

5

7

2

1

0

PMP 402 D

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.