PDBsum entry 4d9c Go to PDB code:  Tunnel analysis for: 4d9c calculated with MOLE 2.0 PDB id 4d9c Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   7 tunnels, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.29 1.29 24.8 0.35 -0.38 4.7 91 0 1 0 6 0 1 0   2 1.29 1.29 25.0 0.53 -0.30 4.3 87 0 1 0 6 0 2 0   3 1.54 1.81 25.3 -1.39 -0.14 8.8 88 2 1 5 1 2 0 0  PMP 402 D 4 1.34 1.34 30.8 -0.94 -0.44 18.6 81 2 3 0 5 1 0 0   5 1.33 1.33 35.0 -0.99 -0.52 18.3 82 2 3 1 5 0 1 0   6 1.17 1.38 46.6 -0.89 -0.34 9.0 86 3 3 4 5 2 1 0  PMP 401 C 7 1.20 1.52 20.7 0.03 -0.24 10.6 86 2 1 1 7 0 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.