PDBsum entry 4d34

Pore analysis for: 4d34 calculated with

MOLE 2.0

PDB id

4d34

Pores calculated on whole structure

Pores calculated excluding ligands

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without HETATM:

6 pores, coloured by radius

11 pores, coloured by radius

11 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.64

3.15

25.6

-2.44

-0.79

14.6

83

2

2

7

2

0

0

0

2

2.07

3.40

32.0

-2.35

-0.78

15.8

84

4

2

8

3

0

0

0

3

1.83

1.90

36.5

-0.35

0.27

7.2

73

1

3

5

4

6

0

1

HEM 500 B E2Z 800 B ACT 861 B GOL 880 B

4

1.63

3.14

50.0

-2.34

-0.67

17.6

80

4

4

7

2

0

1

0

5

2.07

3.40

53.1

-2.59

-0.75

19.8

80

6

3

8

3

0

2

0

6

1.69

1.80

60.5

-0.96

-0.28

12.9

78

5

3

7

8

3

2

1

HEM 500 B E2Z 800 B

7

1.23

1.47

65.7

-0.68

0.31

10.9

76

8

4

6

7

9

0

0

H4B 600 A E2Z 800 A GOL 880 A H4B 600 B E2Z 800 B
GOL 880 B

8

1.19

1.43

68.6

-0.57

0.17

12.5

72

6

4

5

9

9

2

1

HEM 500 A H4B 600 A E2Z 800 A GOL 880 A HEM 500 B
H4B 600 B

9

1.28

1.81

70.1

-1.15

-0.26

11.1

79

6

3

9

8

4

2

1

H4B 600 A GOL 880 A

10

1.27

1.49

83.1

-1.31

-0.06

14.4

76

8

5

5

5

5

4

1

H4B 600 A E2Z 800 A GOL 880 A

11

1.34

1.36

85.3

-1.31

-0.17

13.1

78

9

5

11

9

6

2

1

H4B 600 A E2Z 800 A GOL 880 A

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.