PDBsum entry 4d34 Go to PDB code:  Tunnel analysis for: 4d34 calculated with MOLE 2.0 PDB id 4d34 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 tunnels, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.18 1.37 38.1 0.32 -0.06 6.5 73 1 1 2 6 4 1 1  HEM 500 B H4B 600 B 2 1.21 1.43 39.0 0.19 -0.14 6.9 78 1 1 2 6 3 1 1  HEM 500 A H4B 600 A ACT 860 A 3 1.19 1.43 44.8 -1.08 -0.17 12.9 76 5 3 4 6 5 1 0  HEM 500 A H4B 600 A E2Z 800 A GOL 880 A 4 1.17 1.36 45.4 -0.69 -0.13 11.8 75 5 3 4 3 5 1 0  HEM 500 B H4B 600 B E2Z 800 B ACT 861 B GOL 880 B 5 1.19 1.36 54.0 -0.06 -0.01 8.5 69 3 2 0 6 5 4 1  HEM 500 B H4B 600 B E2Z 800 B 6 1.15 1.38 63.5 -0.37 -0.16 9.3 76 3 3 5 7 5 3 1  HEM 500 B H4B 600 B E2Z 800 B 7 1.46 1.46 17.6 -0.64 -0.02 23.3 74 2 1 0 2 0 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.