PDBsum entry 4d0d Go to PDB code:  Pore analysis for: 4d0d calculated with MOLE 2.0 PDB id 4d0d Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   13 pores, coloured by radius 13 pores, coloured by radius 13 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.19 2.30 31.1 -1.64 -0.46 20.9 82 4 5 1 2 0 2 0   2 3.18 3.38 35.2 -1.27 -0.52 15.0 87 1 3 4 2 1 0 0   3 2.00 2.25 36.8 -1.32 -0.25 15.3 75 2 6 2 2 2 3 0   4 2.43 2.98 37.7 -1.61 -0.35 14.8 76 4 3 2 1 2 1 0   5 1.40 1.84 55.0 -2.04 -0.70 23.4 87 5 6 5 3 1 1 0   6 2.55 2.54 57.9 -2.58 -0.61 27.0 79 7 4 4 2 1 1 0   7 1.39 1.87 73.4 -1.82 -0.50 21.9 80 7 9 6 3 4 1 0   8 1.85 1.85 73.4 -1.63 -0.09 18.2 71 6 4 0 1 4 2 0   9 2.09 2.42 103.2 -1.49 -0.28 20.2 77 6 9 4 3 3 3 0   10 1.29 3.01 105.6 -2.54 -0.62 20.9 82 6 6 7 2 3 0 0   11 1.38 1.85 111.8 -1.91 -0.61 24.0 85 12 13 6 5 2 0 0   12 1.17 1.22 143.9 -1.79 -0.39 21.4 80 7 12 10 10 4 2 0   13 1.38 1.59 140.7 -2.19 -0.62 23.9 86 16 11 7 2 2 2 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.