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PDBsum entry 4cyc

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Top Page protein dna_rna Protein-protein interface(s) pores links
Pore analysis for: 4cyc calculated with MOLE 2.0 PDB id
4cyc
Pores calculated on whole structure Pores calculated excluding ligands

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6 pores, coloured by radius 6 pores, coloured by radius 6 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.25 1.48 28.8 -1.98 -0.41 18.4 87 4 0 2 1 0 0 0  DT 8 C DA 10 C DA 11 C DT 12 C DC 15 C DG 18 D DT
19 D DT 22 D DT 23 D
2 1.30 1.51 29.6 -1.51 -0.56 13.5 91 4 1 5 2 0 0 0  DC 6 C DA 7 C DT 8 C DA 10 C DA 11 C DT 12 C DC
17 D DG 18 D DT 19 D DT 22 D
3 1.34 1.34 33.3 -2.30 -0.30 23.2 85 4 0 2 2 0 0 0  DT 2 C DC 3 C DC 6 C DA 7 C DT 8 C DC 15 C DT 22
D DT 23 D DT 26 D DG 27 D DC 29 D
4 1.34 1.34 39.0 -1.86 -0.37 20.4 90 4 1 5 3 0 0 0  DT 2 C DC 3 C DC 6 C DA 7 C DT 8 C DT 26 D DG 27
D DC 29 D DG 30 D
5 1.35 1.35 43.7 -1.43 -0.14 13.2 75 4 0 2 2 2 0 0  DT 2 C DC 3 C DC 6 C DA 7 C DT 8 C DA 10 C DA 11
C DT 23 D DT 24 D DA 25 D DT 26 D DG 27 D DC 29 D
6 1.27 1.50 46.4 -1.93 -0.26 16.9 89 5 0 4 3 0 0 0  DT 2 C DC 3 C DC 6 C DA 7 C DT 8 C DA 10 C DA 11
C DT 12 C DC 17 D DG 18 D DT 19 D DT 22 D DT 23 D
DT 26 D DG 27 D DC 29 D

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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