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PDBsum entry 4cyc

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Top Page protein dna_rna Protein-protein interface(s) tunnels links
Tunnel analysis for: 4cyc calculated with MOLE 2.0 PDB id
4cyc
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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6 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.52 1.70 26.5 -1.15 -0.43 15.7 83 4 1 3 2 1 1 0  DA 7 C DT 8 C
2 1.27 1.49 28.9 -1.17 -0.30 16.1 85 4 0 3 2 1 1 0  DT 8 C DA 9 C DA 10 C DA 11 C DT 12 C DT 19 D DT
22 D
3 1.58 1.58 29.4 -1.57 -0.38 20.0 80 4 1 2 1 1 1 0  DT 8 C DA 9 C DA 10 C DT 22 D DT 23 D
4 1.51 1.64 29.6 -1.06 -0.44 12.7 88 3 0 4 2 1 1 0  DT 8 C DA 21 D DT 22 D
5 1.27 3.09 37.7 -1.75 -0.29 19.9 79 5 1 3 2 2 1 0  DT 8 C DA 9 C DA 10 C DT 22 D DT 23 D DT 24 D
6 1.36 1.35 48.9 -1.55 -0.25 20.2 83 6 0 3 3 1 1 0  DC 3 C DC 6 C DA 7 C DT 8 C DT 26 D DG 27 D DC 29
D

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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