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PDBsum entry 4c5c

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Ligase PDB id
4c5c
Contents
Protein chains
306 a.a.
Ligands
ATP ×2
DAL-DAL ×2
GOL ×2
Metals
_MG ×7
Waters ×652

References listed in PDB file
Key reference
Title Inhibition of d-Ala:d-Ala ligase through a phosphorylated form of the antibiotic d-Cycloserine.
Authors S.Batson, C.De chiara, V.Majce, A.J.Lloyd, S.Gobec, D.Rea, V.Fülöp, C.W.Thoroughgood, K.J.Simmons, C.G.Dowson, C.W.G.Fishwick, L.P.S.De carvalho, D.I.Roper.
Ref. Nat Commun, 2017, 8, 1939.
PubMed id 29208891
Abstract
D-cycloserine is an antibiotic which targets sequential bacterial cell wall peptidoglycan biosynthesis enzymes: alanine racemase and D-alanine:D-alanine ligase. By a combination of structural, chemical and mechanistic studies here we show that the inhibition of D-alanine:D-alanine ligase by the antibiotic D-cycloserine proceeds via a distinct phosphorylated form of the drug. This mechanistic insight reveals a bimodal mechanism of action for a single antibiotic on different enzyme targets and has significance for the design of future inhibitor molecules based on this chemical structure.
PROCHECK
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