PDBsum entry 3zph

Tunnel analysis for: 3zph calculated with

MOLE 2.0

PDB id

3zph

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

8 tunnels, coloured by tunnel radius

8 tunnels, coloured by tunnel radius

8 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.26

1.27

70.2

-0.57

-0.07

12.8

78

4

5

3

10

4

2

0

2

1.13

1.46

88.8

-1.38

-0.19

20.1

82

9

4

4

10

4

2

0

3

1.21

1.45

106.7

-1.45

-0.29

18.4

81

11

5

6

12

8

2

0

4

1.34

1.34

115.5

-0.78

-0.11

12.0

80

9

5

9

14

10

3

0

5

1.22

1.67

35.4

-1.61

-0.21

11.2

75

2

2

1

4

3

4

0

6

1.21

1.67

36.9

-1.50

-0.26

9.8

74

3

2

1

4

3

5

0

7

1.60

2.02

34.6

-1.00

-0.13

6.6

70

2

1

1

3

4

6

0

8

1.19

1.37

15.4

-0.49

-0.03

11.5

70

1

1

0

3

2

2

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.