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PDBsum entry 3vs2

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Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 3vs2 calculated with MOLE 2.0 PDB id
3vs2
Pores calculated on whole structure Pores calculated excluding ligands

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6 pores, coloured by radius 9 pores, coloured by radius 9 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.31 2.00 27.1 1.77 0.70 5.6 76 0 2 0 6 3 1 0  
2 3.56 3.57 43.9 -1.89 -0.38 18.5 82 5 3 4 2 2 1 0  
3 3.56 3.58 52.8 -2.03 -0.39 20.3 80 7 4 5 2 3 1 0  
4 1.27 1.45 65.0 -0.85 -0.31 16.9 83 4 7 4 9 2 1 0  VSB 601 A
5 1.49 2.41 66.0 -1.87 -0.58 16.7 85 6 6 8 2 2 1 0  
6 3.57 3.59 87.1 -1.15 -0.27 10.3 75 4 3 2 3 2 5 0  
7 1.57 1.83 109.7 -1.49 -0.46 15.9 77 8 8 5 5 4 4 0  
8 1.32 1.49 117.9 -0.74 -0.21 13.0 83 9 4 8 15 5 1 0  VSB 601 A
9 1.48 2.53 164.9 -1.12 -0.32 19.4 83 5 9 6 9 4 0 0  VSB 601 B

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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