PDBsum entry 3vps Go to PDB code:  Tunnel analysis for: 3vps calculated with MOLE 2.0 PDB id 3vps Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.26 2.31 19.5 -1.15 -0.36 15.6 86 3 1 3 4 0 1 0  NAD 401 A 2 1.26 2.26 26.7 -1.22 -0.31 18.5 87 5 2 4 3 1 0 0  NAD 401 A 3 1.23 2.25 42.7 -1.52 -0.28 21.0 83 7 3 5 5 2 1 0  UD1 400 A NAD 401 A 4 1.20 1.42 46.9 -1.21 -0.23 18.1 81 4 4 4 7 2 1 0  UD1 400 A NAD 401 A 5 1.28 2.23 50.0 -0.88 -0.52 13.2 89 5 3 3 4 0 1 0  NAD 401 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.